Pseudomonas putida W619: PputW619_1516
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Entry
PputW619_1516 CDS
T00675
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppw
Pseudomonas putida W619
Pathway
ppw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputW619_1516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppw03019
]
PputW619_1516
03009 Ribosome biogenesis [BR:
ppw03009
]
PputW619_1516
Enzymes [BR:
ppw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PputW619_1516
Messenger RNA biogenesis [BR:
ppw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PputW619_1516
Ribosome biogenesis [BR:
ppw03009
]
Prokaryotic type
rRNA processing factors
PputW619_1516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
ACA72021
UniProt:
B1J511
LinkDB
All DBs
Position
complement(1671844..1675062)
Genome browser
AA seq
1072 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAATETEEAPQPTATRTLVRQEAAVKTAPARANAPVPSAV
EEQQPAAPAAPAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPVVTAEKPATERTQRNEER
RNGRQQSRNRNGRRDEERKPREERAERTPREERQPREERAPREERAPREERAPRQPREDR
RGNREERVRELREPLDAAPAAREERQPREERAPREERAPREERAPREERAPREERAPREE
RAPREERAPREERAPREERAPREERAPREERQPRPPREERQPREAEQAAELADEQLPNEE
LQQDEQEGSDDERPRRRSRGQRRRSNRRERQRNANGELIEGSDEEGSDEQPQQHQATELG
AELAAGLAVTAAVASSNISAGAEAQANQQAERASAEAATTDNSEVAQPAEQVEAVAKAEE
IAIAPVVEQPLSEPVAAIEAGAEPVVEVAPEPVVEQAPAVEPVVVAEAPVEAPVEAPAIE
AGEVEKAQVAAEQAPAAELPAAVVETQPEVAAEPAATVVAAAPVVAEPAPVEAPAAVEAA
TVMLPNGRAPNDPREVRRRKREAEAAAKAAQEAAAAGAPTVETADEQKPHHG
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgcctgtacgacctggacatcgagtccggtgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccggatcgagcccagcctcgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaggaaatctcccgcgagtacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgtggcaacaaaggcgccgccctgaccaccttcatcagcctg
gcaggccgctacctggtgctgatgcccaacaacccccgcgctggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctcaacggcctgaccgtgccaggc
gacatgggcctgatcgtgcgcaccgcaggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgccatcaaggaagcatcgctggatcgcgct
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgatgcccaggaagaagcactgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgta
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtc
gacctgccgtcgggcggctctatcgtgatcgacccgaccgaggccctggtttccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgacgccggcgaaaaaccagcgcgccgtcgaagaacgggta
cgcgaagccctcgaggccgaccgcgcccgcgtacaggtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccgtcgctgggcgaaagcagcggcatcgtc
tgcccgcgctgctccggcaccggcatcatccgtgatgtcgagtcgctgtccctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgtactgccgaagtacgcgcccaggta
ccgattccggtggccgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcatcattctgccgaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgaa
atcgccgccaccgaaaccgaagaagcgccgcagccgaccgccacgcgcaccctggtgcgc
caggaagcagcggtcaagactgcaccggcccgcgccaacgctccggtaccgagcgctgtc
gaagaacagcagcctgccgcaccggcagccccggcacctagcgttccggagccaagcctg
ttcaaaggcctggtgaagtcgctggtcagcctgttcgccggcaaggaagagcctgccgcc
gccccggtggtcaccgccgagaagcctgccaccgagcgcactcagcgtaacgaggagcgt
cgcaacggccgccagcagagccgcaaccgcaacggccgccgtgacgaagagcgcaaacct
cgtgaagagcgtgccgagcgcaccccgcgcgaagagcgccagccgcgtgaagagcgcgca
cctcgtgaagaacgtgcacctcgtgaagagcgcgcccctcgccagccacgcgaagaccgc
cgcggcaaccgcgaagagcgcgtccgcgaactgcgcgagcctctggatgcagcaccggcc
gctcgcgaagagcgccagccacgtgaagagcgtgcacctcgcgaagaacgtgctccacgt
gaagaacgcgcacctcgcgaagaacgtgctccacgtgaagagcgcgcgcctcgcgaagaa
cgtgctccacgtgaagagcgtgcgcctcgtgaagaacgcgctccacgtgaagagcgtgca
cctcgtgaagaacgcgcaccgcgtgaagaacgtcagccacgccctccacgcgaagagcgc
cagccacgtgaagctgagcaggctgcagagctcgccgatgagcaactgccgaacgaggag
ctgcaacaggacgagcaggaaggttccgatgacgagcgtccgcgccgccgctctcgcggc
cagcgtcgccgcagcaaccgtcgtgagcgccagcgcaacgccaatggcgagctgatcgaa
ggcagcgacgaagaaggcagcgacgagcaaccgcaacagcaccaggccaccgagctgggt
gccgaactggctgccggcctggctgtcaccgcggctgtcgccagcagcaacataagtgct
ggcgccgaagcgcaagccaaccagcaggctgaacgcgccagcgccgaagccgccaccacc
gacaacagcgaagtcgctcagccggccgagcaggtcgaagccgtcgccaaggccgaggaa
atcgccattgcaccggtggtcgagcagccgctcagcgagccggtcgctgcgatcgaagcc
ggtgccgagcctgtggttgaagttgcgcctgagccggtagtcgaacaagcccctgcggtc
gagccggtagtggttgccgaggcgcctgtagaggcacctgtcgaagcgccggccatcgaa
gcaggtgaagtagagaaagcccaggtcgccgctgaacaagcgccggctgccgagctgcct
gcggctgtcgttgaaacccagccagaagtggctgccgagcctgcagcaaccgtagttgca
gcagcgccagtggtcgccgagcctgccccggtagaagcaccggcagcggtcgaagccgcc
accgtcatgctgcctaacggtcgcgcccctaacgacccacgtgaagtgcgtcgtcgcaag
cgtgaggccgaagcggctgccaaggctgcgcaggaagcggccgctgctggcgcgccaacg
gtggagaccgctgatgagcaaaagcctcatcacggttga
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