Pseudomonas putida W619: PputW619_3900
Help
Entry
PputW619_3900 CDS
T00675
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppw
Pseudomonas putida W619
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppw03016
]
PputW619_3900
Enzymes [BR:
ppw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PputW619_3900
Transfer RNA biogenesis [BR:
ppw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PputW619_3900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ACA74380
UniProt:
B1JCV4
LinkDB
All DBs
Position
complement(4333207..4334340)
Genome browser
AA seq
377 aa
AA seq
DB search
MAIEIHWIRDDQTLAELCQRWRTLPFVALDTEFMRVDTFYPKAGLIQIGDGERAYLIDPL
LIVDWQPLGELLEDAGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGY
SRLVQEVLGLELPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFAALRPRLSDDKYAWV
LEDGAELVAALRREVEPETLYRDVKLAWKLGRQQLAVLRELCAWREREARSRDVPRNRIL
KEHSLWPMAKNQPDNLSALAKIDEMHPRTIRQDGPFLIELIKRAASLPPEQWPATLPEPL
PIEAAGILKRLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRE
RMGQALLDDLAGAGETR
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgaaatacactggatccgtgacgaccagaccctggccgaactctgccagagg
tggcgcacattgccctttgtggcgctcgacaccgaattcatgcgggtcgacaccttctac
ccgaaagccggcctgatccagatcggtgacggcgagcgggcttatctcatcgacccgttg
ctgatcgtcgactggcagccgctgggcgaactgctagaggatgccggcgtggtcaaggtg
ctgcatgcctgcagcgaagacctcgaagtgctgctgcgcctgaccggcaagctgccccag
ccgctgttcgacacgcagttggccgcgggctacctgaacctgggcttctccatgggctat
tcgcgcctggtccaggaagtgctgggccttgagctacccaagggtgaaacccgctcggac
tggctgcagcgtccgctgtcggacacccaggtcagctacgccgccgaagatgccgtgcac
ctggccgaactgtttgcggccctgcgcccccggctgtccgacgacaagtacgcgtgggtg
ctggaagacggtgccgaactggtggcggcgttgcgccgtgaggtcgagcccgagaccctg
taccgcgatgtcaagctggcctggaagctgggccgccagcaactggcggtgctccgcgag
ctgtgcgcctggcgcgagcgtgaagcacgcagccgcgatgtgccgcgcaaccgcatcctc
aaggaacactcgctgtggccaatggccaagaaccagccggacaacctgtcggccctggcc
aagatcgatgaaatgcacccacgcaccatccgccaggatggccccttcctgatcgagctg
atcaagcgtgctgccagcctgccgcctgagcaatggccggccacgttgccagaaccactg
ccgatcgaagcggccggcatcctcaagcgcctgcgcgccatcggccaggccgaaggcgag
cgcttgggcattgccccggagctgatgctgcgcaaaaaggccctggaagccctgctcaag
agcggctaccccaatggcccctatcaactgcccgattcgctgcgcggctggcgccgtgag
cggatgggccaggccctgctggacgacctggcgggcgccggagaaacccgatga
DBGET
integrated database retrieval system
