Pseudomonas putida W619: PputW619_4067
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Entry
PputW619_4067 CDS
T00675
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppw
Pseudomonas putida W619
Pathway
ppw03030
DNA replication
ppw03430
Mismatch repair
ppw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputW619_4067
03430 Mismatch repair
PputW619_4067
03440 Homologous recombination
PputW619_4067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppw03032
]
PputW619_4067
03400 DNA repair and recombination proteins [BR:
ppw03400
]
PputW619_4067
Enzymes [BR:
ppw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PputW619_4067
DNA replication proteins [BR:
ppw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PputW619_4067
DNA repair and recombination proteins [BR:
ppw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PputW619_4067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACA74547
UniProt:
B1JBP5
LinkDB
All DBs
Position
complement(4488683..4492207)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCALVKFYKAAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVILQREWI
APASEGLIALSAGKEGDIGMALMAGRTTEAEALLHDWMGMFPERFYVEVQRTNRVGDEEY
VHAAVALADKVGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRPRMYSDQQYLK
SADEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
ADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNASEFKFTVNDDGRIIYGLGAI
KGVGEGPVEAIVEARDQGGPFKDLFDFCERVDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLFVEEDSDVYANHRKVR
ELTLKERLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDLKPSRETQTIAGMIIAMRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMGAQALLQNDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKITHDALKGDRLNWLGELITRHRGGCPITLEYTGSDAKA
MLQFGDQWSIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggtctg
gtgcggatcaaaccgctggccaaggcgctggccgggatgaacatgcctgcggtggcgatc
accgaccagagcaacatgtgcgcgttggtgaagttctacaaggccgccatgggggcgggt
atcaagccgatctgcggtgctgacctgtggctggccggtgccgaccctgaagcgccgctg
tcgcgcatctgcttcctggcgatgaaccccaagggttaccgtaaccttaccgagctgatc
tcccggggctggactgacggccaacgcaatggtctggtcattctgcagcgtgagtggatc
gccccggctagcgaaggtctgattgccctgtccgcaggcaaagagggcgatatcggcatg
gccctgatggccggccggacgactgaggccgaggcgctgctgcacgactggatgggcatg
ttccccgagcgtttttacgtcgaggtgcagcgtaccaatcgtgtcggtgatgaagaatac
gtgcacgctgccgtggcgctggccgacaaggtcggcgcgccgctggtggccaccaatgat
gtgcgttttatcaagcagtcggacttcgacgcccacgaaagccgcgtgtgcatcggtgaa
ggctggaccctggacgacccacgtcgcccgcgcatgtacagcgaccagcagtacctcaaa
agcgcggatgaaatggccgagctgttcagcgatctgcccgacgccattgccaacaccgtc
gaaatcgccaaacgctgcaacatccaggtgcagctgggcaagtacttcctgcccgatttc
ccgacgcccaatggcatgggcatcgacgattacttgcgccatgtctcgcacgaaggcctg
gaggagcgcctggcggtgctctggcccaaggagaccacgcccaattacgaagagaagcgc
caggtctacctggaccgcttgaagttcgagctggacatcatcatccagatgggtttcccg
ggttacttcctgatcgttatggacttcatcaagtgggccaagaacaacggcgtgccggta
ggcccgggccgtggttcgggtgccggctcgctggtggcctacgtacttaagatcaccgac
ctcgatcctctggcctacgacctgctgttcgaacgtttcctcaaccctgaacgtgtttcc
atgcccgacttcgacgtcgacttctgcatggatggccgcgaccgggtgatcgactacgtg
gccgacgcctacgggcgcaatgcggtcagccagatcatcaccttcggtaccatggccgcc
aaggcggtggtacgcgacgtggcgcgggtgcagggcaagtcctacggcctggctgatcgt
ttgtcgaagatgatcccgttcgaagtgggcatgaccctggagaaggcgtatgagcaggaa
gagatcctgcgcgacttcctcaagggcgacgaagacgcccgcgaaatctgggacatggcg
ctcaagctagaaggtgtcacccgtggtaccggcaagcacgccggtggtgtggtaatcgcc
ccgaccaagctcaccgatttctcgccgatcgcctgtgatgaagagggcggcggcctggtg
acccagttcgacaaggacgatgtcgaggccgccggcctggtcaagttcgacttccttggc
ctgcggaccctgaccatcatcaagtgggcgatggagacgatcaaccgcgagcaggccaag
aacaacctgcccgacgtcaacatcgacttcatcccgctggacgatcgcaagacctacgag
ttgctgcagaaggccgaaaccacggcggtattccagctcgaatcgcgcggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagaccttatcgcactggtggcattgttc
cgcccaggccccctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgaacttgcctacccgcactcggactaccagtacgaaggcctcaagcctgttcttgcg
ccgacctacggcatcatcctgtatcaggagcaggtgatgcagattgcacaggtcatggcg
gggtacaccctcggcggcgccgacatgctgcgtcgcgccatgggtaagaaaaagcctgag
gaaatggccaagcagcgcggcggtttcatcgagggttgcgtcgccaacaacattgatgca
gacctcgccggcaacatcttcgacctggtggaaaagtttgccggttacggcttcaacaag
tcccactcggcggcctacggtctggtgtcttaccagaccgcctggctcaagactcattat
ccggcgccgttcatggccgcggtcctctcggcggacatgcacaacaccgacaaggtggtg
gtgctgatcgaagaagtgcgcagcatgaagctgcgcctcgatgcgcccgacgtgaatgcc
tcggagttcaagttcacggtcaatgacgacggccgcatcatctatggcctaggcgccatc
aaaggcgtgggtgaaggcccggtggaggccattgtcgaggcacgcgaccagggtggccca
ttcaaggatcttttcgacttctgtgagcgggtcgacctcaagcgggtgaacaaacgcaca
cttgatgcgctgatccgcagtggcgcactggaccggctgggcccgcactttcatgatgag
atcaaggcctaccacgccagtatcgacattaatcgcgcgaccttgctgtctgccctcgaa
gaagcgatcaaggccgctgagcagaccgcgcgcactgcagacagcggtcacgtcgacctg
ttcggcgggctgttcgtcgaggaggactccgatgtctacgccaaccaccgcaaggtgcgt
gaactgacgctcaaggagcgtctgaagggcgaaaaggatacccttggcgtatatctcacc
ggccacccgatcgatgaatatgaaggggaaatccgtcgtttcgcccgccagcgcatcatc
gatctgaaaccctcccgcgagacgcagactatcgccggcatgatcattgcgatgcgggtg
atgaagaacaagaagggcgacaagatgggctttgtcaccctcgatgaccgctccgggcgc
atcgaagcgtcgctgttcgccgatgccttcatgggggctcaggcgttgttgcagaacgat
gccatggtcgtggttgagggtgaggtcagcaatgacgacttctccggtggcctgcgcctg
cgcgtcaagcaggtgatgaccatggaagatgcccgtaccaagctggccgagagcctgcgc
ctgaagatcacccacgatgccctcaagggcgaccgcctgaactggctgggcgagctgatc
acccgccatcgcggtggttgcccgatcaccctcgaatacaccggcagcgacgccaaggcg
atgctgcagttcggcgaccagtggtcgatcgacccggccgatggcttgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
DBGET
integrated database retrieval system
