Pseudomonas putida DOT-T1E: T1E_0487
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Entry
T1E_0487 CDS
T02181
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppx
Pseudomonas putida DOT-T1E
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppx03032
]
T1E_0487 (topA)
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_0487 (topA)
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
T1E_0487 (topA)
DNA replication proteins [BR:
ppx03032
]
Prokaryotic type
DNA Topoisomerases
T1E_0487 (topA)
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
T1E_0487 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AFO46345
UniProt:
I7AUN1
LinkDB
All DBs
Position
complement(553220..554815)
Genome browser
AA seq
531 aa
AA seq
DB search
MAHRSYIEREFGKQYLPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYE
LIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPAEDDVLPE
MVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTL
HNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFS
KKLQTAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATV
NLVPGDEIAADDEGESESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIE
EGNYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDK
VDMPELKCEKVDDTYVLRDGASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLC
DAPQKDPDGRPAVIRYSRKTKEQYVQSEVDGKPTGWKAFYDGNAWKVEDKR
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcatcgcagctacatcgaacgggagttcggcaagcagtacctgccggaggcgcca
ctggtttacggcagcaaggagggcgcccaggaggcgcacgaagcgattcggccttctgac
gtgaatacccacccgaccaagctcagcggcatggagcgtgacgccgagcgcctgtacgag
ctgatctggcgccagttcctggcgtgccagatgccgccagcgcagtacctgtccaccagc
gttaccgtcgctgccggcgatttcgagctgcgtgccaagggccgcatcctcaagttcgac
ggctacacccgtgtgctgccacagcagagcaagccggccgaagacgacgtgctgccagag
atggttcagggtgaagcgctgaaactgatccagatcgacccgagccagcactttaccaag
ccgcctgcacgctttaccgaagccagcctggtcaaggaaatggaaaagcgcggcattggc
cgcccatcgacctacgcggcgatcatttccaccatccaggaccgtggctatgtgacgctg
cacaaccgccgcttctactccgagaagatgggcgatatcgtcaccgagcgcttgtcggag
agcttctccaacctgatggattacggctttaccgccgacatggaagagaacctcgacgac
gtggcccagggcgagcgtgactggaagaacgtgctcgacgagttctacggcgatttcagc
aaaaagctgcagactgccgagtccagtgaagacggcatgcgcgccaaccagccgaccatg
accaacattccatgcaaggaatgtggtcggccgatgatgattcgcaccgcttctacgggt
gtgttcctgggctgctctggctacagcctgccgccgaaagagcgctgcaaggctaccgtc
aacctggtgccgggcgacgagattgccgctgacgacgagggcgagtcggagtcgcgcgtg
ctgctgggcaagcaccggtgcccgatctgcgccacggcgatggacgcctacctgctggac
gagaaacacaaactgcacatctgcggtaacaacccggattgtgtcggttacgagatcgaa
gaaggcaactaccgcatcaagggttacgaagggccgagcctggagtgcgacaagtgcggt
agcgagatgcaattgaagaccggccgtttcggcaagttcttcggctgcaccaacccggca
tgcaagaacacccgcaagctgctcaagagcggcgaggcggcgccaccgaagatggacaag
gtggacatgccggagctcaagtgcgagaaggtcgatgatacctacgtgctgcgcgacggt
gcttctgggttgttcctggctgccagccagttccccaagaaccgcgaaacccgtgcgccg
ctggtgctggagattgtgccgcacaagcatgagattgacccgaagtaccacttcctgtgc
gatgcgccgcagaaagacccggatggccgcccggcggtgattcgttacagccgcaagacc
aaggagcagtacgtgcagtccgaggtcgatggcaagccgaccggttggaaggcgttttac
gacggcaatgcctggaaggttgaagacaagcgctga
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