Pseudomonas putida DOT-T1E: T1E_0604
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Entry
T1E_0604 CDS
T02181
Symbol
fadB
Name
(GenBank) Fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx00071
Fatty acid degradation
ppx00280
Valine, leucine and isoleucine degradation
ppx00310
Lysine degradation
ppx00362
Benzoate degradation
ppx00380
Tryptophan metabolism
ppx00410
beta-Alanine metabolism
ppx00640
Propanoate metabolism
ppx00650
Butanoate metabolism
ppx00907
Pinene, camphor and geraniol degradation
ppx00930
Caprolactam degradation
ppx01100
Metabolic pathways
ppx01110
Biosynthesis of secondary metabolites
ppx01120
Microbial metabolism in diverse environments
ppx01200
Carbon metabolism
ppx01212
Fatty acid metabolism
Module
ppx_M00087
beta-Oxidation
ppx_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
T1E_0604 (fadB)
00650 Butanoate metabolism
T1E_0604 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
T1E_0604 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
T1E_0604 (fadB)
00310 Lysine degradation
T1E_0604 (fadB)
00380 Tryptophan metabolism
T1E_0604 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
T1E_0604 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
T1E_0604 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
T1E_0604 (fadB)
00930 Caprolactam degradation
T1E_0604 (fadB)
Enzymes [BR:
ppx01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
T1E_0604 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
T1E_0604 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
T1E_0604 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
T1E_0604 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AFO46462
UniProt:
I7BQU8
LinkDB
All DBs
Position
682634..684781
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIQADASVKGVIVSS
GKDVFIVGADITEFVDNFKLPEAELVAGNLEANRIFNAFEDLEVPTVAAINGIALGGGLE
MCLAADYRVMSTSARIGLPEVKLGIYPGFGGTVRLPRLIGSDNAIEWIAAGKENRAEDAL
KVGAVDAVVAPELLLAGALDLIKRAIGGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKSIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQEL
KRKAKAHDEIAHDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGNRVEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVK
DDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP
KKVFDATVLDVLKPIVFEQREVTDEDIINWMMVPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGPLYHPTAKLREMAKNGQRFFN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgagctc
aagttcgacctcaagggtgagtccgtcaacaagttcaaccgccttaccctgaacgagctg
cgccaggccgtcgatgccatccaggccgatgcctcggtcaaaggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgagttcgtcgacaacttcaagctg
cctgaggccgaactggtcgccggcaacctggaagccaatcgtatcttcaacgccttcgaa
gacctcgaagtgccgaccgttgccgccatcaacggcatcgcgctgggcggcggcctggaa
atgtgcctggcggccgactaccgggtcatgtccaccagcgccaggatcggcctgccggaa
gtcaagctgggtatctacccgggctttggcggtaccgtgcgcctgccgcgcctgatcggc
tcggacaacgccatcgagtggatcgccgccggcaaggaaaaccgtgccgaagacgccctg
aaagtgggggccgtcgacgcggtggtcgcccctgagctgctgctggccggtgccctcgac
ctgatcaagcgtgccatcggtggcgagctggactacaaggccaagcgccagccgaagctg
gaaaagctcaagctcaatgccatcgagcagatgatggccttcgagacggccaagggcttc
gtcgctggccaggccggcccgaactacccggccccggtcgaagcgatcaagagcatccag
aaagccgccaacttcggtcgcgacaaggccctggaagttgaagccgcaggctttgccaag
ctggccaagacctcggtcgccgagagcctgatcggcttgttcctcaacgatcaggaactc
aagcgcaaggccaaggcgcatgacgagatcgcccacgacgtgaagcaggccgccgtgctc
ggcgccggcatcatgggcggcggtatcgcctaccagtcggcggtcaaaggtacgccgatc
ctgatgaaagacatccgcgaagaagccattcagctgggtctgaacgaggcctccaagttg
cttggcaaccgcgtcgagaagggccgcctgaccccagccaagatggccgaggccctcaac
gccattcgaccgaccctgtcctatggcgattttgccaatgtcgacatcgtcgtcgaggca
gtggtcgagaacccgaaggtcaagcaagcggtactggcggaagtggaaggccaggtgaag
gacgatgcgatcctcgcttccaacacctctaccatctctatcaacctgctggccaaggcg
ctcaagcgcccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggtgagaagtccagtgaagtggcggtcgccaccaccgtggcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggctttttggtc
aaccgcgtgctgttcccgtactttggcggttttgccaagctggtcagcgccggtgtcgac
ttcgtgcgcatcgacaaggtcatggagaagttcggctggccgatgggcccagcctacttg
atggacgtggtcggcatcgacaccggccaccacggccgtgacgtcatggccgaaggcttc
ccggatcgcatgaaggacgagcgccgctcggcagtcgacgcgttgtacgaggccaaccgc
ctgggccagaagaacggtaagggcttctacgcctacgaaaccgacaagcgcggcaagccg
aagaaggttttcgatgccaccgtgctcgacgtgctcaaaccgatcgtgttcgagcagcgt
gaagtcactgacgaagacatcatcaactggatgatggtcccgctgtgcctggagaccgtg
cgttgcctggaagacggcatcgtcgaaaccgctgccgaagccgacatgggcctggtctac
ggcattggtttccctcccttccgcggtggtgcgctgcgttacatcgactcgatcggtgtg
gccgaattcgtcgccctggccgatcagtatgccgacctggggccgctgtaccacccgacc
gccaagctgcgtgaaatggccaagaacggccagcgcttcttcaactga
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