Pseudomonas putida DOT-T1E: T1E_0634
Help
Entry
T1E_0634 CDS
T02181
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T1E_0634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppx03019
]
T1E_0634
03016 Transfer RNA biogenesis [BR:
ppx03016
]
T1E_0634
Enzymes [BR:
ppx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
T1E_0634
Messenger RNA biogenesis [BR:
ppx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T1E_0634
Transfer RNA biogenesis [BR:
ppx03016
]
Prokaryotic type
tRNA degradation factors
T1E_0634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
TraK_C
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AFO46492
UniProt:
I7BQX6
LinkDB
All DBs
Position
complement(716007..718112)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN
TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSASEVKDIFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagactttccagttcggtcaatcgaccgtcactctcgaaacgggc
cgtattgcccgtcaggcaaccggcgccgtgctggttaccgtcgacaacgacgtcaccgtg
ctggtgactgtggtaggcgccaaacaggctgatccaggcaagggtttcttcccgctgtcg
gttcactaccaggaaaagacctacgccgctggcaagatcccaggtggcttcttcaagcgt
gaaggccgtccttccgagaaagagacgctgacctcgcgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggtcgtctgcaccgtggtttccacc
agcaagaagaccgacccggacatcgccgcgatgatcggtacctcggctgccctggccatt
tccggcattccgttcgaaggcccgatcggcgctgcccgcgttgccttccacgaaagcact
ggctacctgctgaacccgacctacgagcaactggctgcctcgagcctggacatggtcgtt
gccggtacctccgacgccgtactgatggttgaatcggaagctcaagagctgaccgaagac
cagatgctgggtgccgtactgttcgcccacgacgaattccaggctgttatccaggctgtc
aaagagctggctgccgaagctggcaagccgacttgggactggaaacctgccgttgccaac
accgagctgttcaatgctatccgcgccgagttcggcgaagcggtttcgcagggttacacc
atcaccgtcaaagccgaccgctatgcgcgtctgggtgagctgcgtgaccaggcggttgcc
aagttctccggtgaagaaggccagccttcggcttccgaagtaaaagacatcttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggccgc
gacaccaagactgtacgcccgctgaacatcgaagtgggtgtgctgccgaaaactcacggt
tcggcactgttcacccgtggcgaaacccaggccctggtcgttgcgaccctgggtactgcc
cgtgatgcccagctgctggacaccctcgaaggtgagaagaaagaccccttcatgctgcac
tacaacttcccaccgttctcggtaggtgagtgtggccgcatgggcggtgctggccgtcgc
gaaatcggccacggccgtctggcccgccgttcggttcaggccatgctgcctgctgctgac
gtgttcccgtacaccatccgtgtggtttcggaaatcaccgaatccaacggttccagctcc
atggcttcggtctgcggtgcttccctggccctgatggacgccggtgtgccgatgaaggcg
ccagttgccggtatcgccatgggcctggtcaaggaaggcgacaagttcgcagtcctgact
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aaaggcgtcaccgcgctgcagatggacatcaagatcaacggcatcaccgaagagatcatg
gaaatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggccagtcgcgtaccgaactgtcggccaacgccccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgtcatcggtaaaggcggcgccaccattcgcgccatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggcagatgctgccaagcagcgcatcctgggcatcaccgccgaggcc
gagatcggcaagatctacgtcggcaaggtcgagcgcattgtcgatttcggcgccttcgtc
aacatcctgcctggcaaggacggcctggtgcacatctccatgctgagcgatgctcgcgtc
gagaaagtcaccgacatcctgaaagaaggccaggaagtcgaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtcgatcaaagacgtcgctgcggccaaggcctcgggc
gtctaa
DBGET
integrated database retrieval system
