Pseudomonas putida DOT-T1E: T1E_0848
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Entry
T1E_0848 CDS
T02181
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
T1E_0848 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_0848 (recD)
Enzymes [BR:
ppx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
T1E_0848 (recD)
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
T1E_0848 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
NAT10_TcmA_helicase
AAA_22
SH3_13
Viral_helicase1
UvrD-helicase
AAA_16
SLFN-g3_helicase
TraI_hel_assoc_N
AAA_17
AAA_28
T2SSE
nSTAND3
AAA_5
PhoH
NTPase_1
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
AFO46706
UniProt:
I7C0V3
LinkDB
All DBs
Position
complement(957982..960057)
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AA seq
691 aa
AA seq
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MSRSLVDLLPTPLHAEHLLALAPQHNSADLLQLLDRWVERGWLRALDRAFVSFLEERAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLD
LNAWLERIVASPLVAAGDTPGQQARPLVRSGERLYLRRYWRYERRIDHALRQRLSQAEAP
PSDLPERLAQLFEGGAPAGQLDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTEVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGFYSPATAAWLQQVSGESLAGSGLKAGDEQRHPLAQQVVMLRFSRRFGE
GSGIGQLARLVNRQDAHAARNLLAAPPADVHSLSLKHEQDRAFDRLLLDGLNRGTDGPQG
YRSYLRTLGRYRPALDTAFDDPAWEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDEQGQPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPDALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagccttgtcgacctgttgcccaccccgttgcacgccgagcacctgctggcg
ctggcaccgcagcacaacagcgctgacctgctgcaattactcgaccgttgggttgagcgg
ggctggctacgtgccctggaccgcgcattcgtgtcgttcctggaagagcgtgcccccggc
agtgatcccttgctattgctggcagcggcgctggccagtcaccaactggggcacggacat
gtctgcctcgacctgcaacaaaccttggccgagccggatttcgccctgtcgttgccgccg
gaaggtgacgcccttatcggccctttgctactgccatcgcaactgctggccaaccttgac
ttgaatgcctggcttgagcgcatcgtcgccagcccgctggtggccgcaggtgatacgcct
ggccagcaagcgcggccgctggtacgcagtggcgagcgcctttacctgcgccgttactgg
cgttacgaacggcgcatcgaccatgccctgcgccagcgcctgagtcaggccgaagccccc
ccttcagacctgccagagcgcctggcgcaactgttcgagggcggcgcgccagctggccag
ttggactggcagaagctcgcctgtgccttggccacccgtgccggtttcagcatcatcacg
ggtggccccggcaccggcaagacgaccaccgtggtgcgcctgctggcgttgctgcaggca
ccggcagtggagcagggcaggccactgcgcatccgcctggctgcaccgaccggcaaggcc
gctgcgcgcctgaccgaatccattggtcagcaagtcgagcgactgcaagtcagcgccgaa
gtacgcgggcaaatccctactgaagtcagcaccgtgcatcgcctgctcggcagccgccca
ggctcgcggcacttccgccatcatgctggcaacccgttgccgttggatgtgctggtggtc
gacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgccttgccgccg
cgggcgcgtctggtgctgctgggcgacaaggaccagttggcctcggtcgaggccggcgcg
gtactgggtgacctgtgccgggatgctgaggagggcttttactcgccggcgactgcagcg
tggcttcagcaggtcagtggcgagtcgctggccggcagtggcctcaaggccggcgatgag
cagcgccacccgttggctcagcaagtggtgatgctgcggttttcacggcgtttcggtgaa
ggcagcggtattggccagttggccagactggtcaatcgtcaggatgctcacgcggcgcgc
aacctgctggccgcgccgcctgctgacgtgcacagcctgtcgctcaagcacgagcaggat
cgtgctttcgaccgcctgttactggacggtctgaaccgcggtaccgatggaccgcaaggc
taccgcagctacctgcgcacccttgggcgttaccggccagcacttgataccgcctttgac
gaccccgcctgggagcaatgggcgggcaaggtgttgcgcagtttcgaggatttccagttg
ctgtgtgcggtgcgccggggcgcctggggggtcgaaggcctgaatgaacgggtggcgcgg
gtgctgcacaatgccggtctgatcgacagccagcagccttggtacgaaggacgcccggtg
ctggtgacccgcaacgactacggcctgggcctgatgaatggtgacatcggtatagccctg
cgcttgccggatgagcagggccagccgctgctgcgtgtggccttcccgcgcaacgacggc
agtggtggggtgcggttcgttctgccgagccggctcaacgaagtggaaacggtattcgcc
atgaccgtgcacaagtcccagggctcggagttcagccacactgccctggtgctgccggat
gcgctcaacccggtgctgaccaaggaactggtgtacaccggcatcactcgggccaagcac
tgcttcagcctggtcgagccacgccaaggcattttcgaagaagcggtggcgcgcaaagta
cggcgtatttccgggttgatgctcgagcaggtctag
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