Pseudomonas putida DOT-T1E: T1E_0874
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Entry
T1E_0874 CDS
T02181
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppx
Pseudomonas putida DOT-T1E
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppx03032
]
T1E_0874
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_0874
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
T1E_0874
DNA replication proteins [BR:
ppx03032
]
Prokaryotic type
DNA Topoisomerases
T1E_0874
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
T1E_0874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
TcaA_2nd
Motif
Other DBs
NCBI-ProteinID:
AFO46732
UniProt:
I7BRI4
LinkDB
All DBs
Position
995833..998253
Genome browser
AA seq
806 aa
AA seq
DB search
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD
ITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAETFKN
IHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQ
VFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE
QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFA
DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS
ELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI
GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVK
RGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMKTLKRLS
RLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYNASLREDKERN
VWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLSSLLGEGAYVQRGERRKAIVE
FKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFN
TLMGDAVEPRRDFIESNALSVSNLDF
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaatcaaacgtacgactcctccagcatcaaggtgctgaaaggtttggatgcc
gtacgcaagcgtcccggcatgtacattggcgacaccgatgatggtagtggcctgcaccac
atggtcttcgaggtggtcgacaactcgatcgacgaagccctcgccggtcactgcgatgac
atcaccgtcatcatccacccggacgaatctatcagtgtgcgcgacaacggtcgcggcatt
ccggtcgatgtgcataaggaagaaggcgtttccgcagccgaggtcatcatgactgtgctg
cacgccggcggtaagttcgacgacaactcctacaaagtatccggcggtctgcacggtgta
ggtgtgtcggttgtgaacgccctgtccgagaagctggttctgaccgttcgccgtagcggc
aagatttgggaacagacttacgttcacggtgttccacaagcgcctatggcggttgtcggt
gacagtgaaaccacgggtacccacatccacttcaagccatcggctgaaaccttcaagaac
attcacttcagctgggacatcctggccaagcgcatccgcgaactgtcgttcctcaactcg
ggcgttggcattctgctgaaggatgagcgcagcggtaaggaagagttcttcaagtacgaa
ggcggtctgcgtgcgttcgtcgagtacttgaacaccaacaagacgccggtcaactcccag
gtgttccacttcaacgttcagcgtgacgatggcgtgggtgttgaagtcgccctgcaatgg
aacgacagcttcaacgaaaacctgctgtgctttaccaacaatattccgcagcgagatggc
ggcacccacctggtgggcttccgttcctcgctgacccgtagccttaacagctacatcgag
caggaaggcctggccaagaagaacaaggtggcaaccactggcgacgacgcccgtgaaggc
ctgaccgcaatcatctcggtgaaggtaccggacccgaagttcagctcgcagaccaaggac
aagctggtctcctcggaggtgaaaaccgccgtggaacaggagatgaacaagtacttcgcc
gatttcctcttggaaaacccgaacgaggcgaaggccgtcgttggcaagatgatcgacgcg
gctcgcgcccgtgaagccgcccgtaaagcccgtgaaatgacccgccgtaaaggtgcgctg
gatatcgcgggtctgccgggcaaactggccgactgccaagagaaggatcctgctctctcc
gaactgtacctggtggagggtgactctgcgggtggctcggccaagcaaggccgcaaccgt
cgtacccaggcgatcttgccgctgaagggtaaaatcctcaacgtcgagaaagcgcgcttc
gacaagatgatttcgtcccaggaagtgggcacgctgatcactgcgctgggctgtggcatc
ggccgcgaagagtacaacatcgacaaactgcgttatcacaacatcatcatcatgaccgat
gctgacgttgacggttcgcacatccgtacgctgctgctgacctttttcttccgtcagctg
ccggagctggtcgagcgtggctacatctatattgcccagccgccgctgtacaaggtgaaa
cgaggcaagcaggagcagtacatcaaggacgatgaggccatggaagagtacatgacccag
tcggctctggaagatgccagcctgcacctggacgaatcggcgccagcagtttccggtgtg
cagctggaagcgctggtgaatgagttccgtagtgtcatgaagactctcaagcgcctgtcg
cgcttgtacccggaagagctgactgagcacttcgtctacctgcctgaggtgaccctggag
cagttgggggaccacgcagtgatgcaggcctggctggcccagttccaggcgcgtctgaac
tccagccagaagtctggcctggcttacaacgccagcctgcgtgaagacaaagagcgcaac
gtatggctgcctgaagtggaaattacctctcacggtctggccagctacatcaccttcaac
cgcgatttcttcggcagcaatgactaccgtaccgtagtcaacattggtgccaagctttcg
agcctgttgggtgaaggtgcgtacgtgcagcgcggtgaacgccgcaaggcaatcgtcgag
ttcaaagagggcctggattggctgatgaacgagaccaccaagcgccatacgattcagcga
tacaaagggctgggtgagatgaacccggaccaactgtgggaaaccaccatggacccgacc
gttcgccgtatgctcaaggtcactatcgaagatgccatcgccgctgaccagatcttcaac
accctgatgggtgatgcagtcgagccgcgtcgtgacttcatcgaaagtaacgcgctgtcg
gtgtcgaacctggacttctga
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