Pseudomonas putida DOT-T1E: T1E_1128
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Entry
T1E_1128 CDS
T02181
Symbol
rhlE
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T1E_1128 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppx03019
]
T1E_1128 (rhlE)
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T1E_1128 (rhlE)
Messenger RNA biogenesis [BR:
ppx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T1E_1128 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFO46985
UniProt:
I7AWE9
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All DBs
Position
complement(1282144..1283925)
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AA seq
593 aa
AA seq
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MLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQ
VHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHV
EILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEV
TPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGL
TAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYV
HRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPETRE
RPQNNGRGGRSQQARGEGAKDSNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQQPRKP
RDKKPRPQQASNNGVPKPPADRDPEEFLDDEVDNFGNRADYVSPYQGKNQGRNRRPGGAG
QGQGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPRANNGGGARRDGGGGRGRPARDDAA
RQEPAVRNPRQPEKQPVIIRKESKLDRFPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcaaggccgcgacctgatggttgccgcacagacaggtacgggtaaaaccggcggc
ttcgccctgccgattctcgagcgcctgttcccggccggccatcccgacaaatcgcagcgc
cacggcccacgccagcctcgcgtactggtcctgacaccgacccgcgaactggcagcccag
gtgcatgacagtttcaaggtctatgcccgtgacctgccactggtcagcgcctgcatcttc
ggcggcgttggcatgaacccgcagatccaggccattgccaaaggcgttgatgtgctggtc
gcctgcccaggccgcctgctggatctggccggccaaggcaaggtcgacctggcccacgtg
gaaatcctggtacttgatgaagccgatcgcatgctcgacatgggcttcatccacgacgtc
aagaaggtgctcgcccgcctgccggccaagcggcagaacctgctcttctcggccaccttc
tccaaggacatcaccgacctcgccgacaagctcctgcacaacccggagcgtatcgaggtc
accccgccgaacaccaccgtcgagcgtatcgagcagcgtgtgtaccggctgcctgccagc
cacaagcgtgccctgctggcgcacctgatcaccttgggcgcctgggaacaggtgttggtg
ttcacccgaaccaagcacggtgccaaccgcctggccgagtacctggagaagcaaggcctg
accgccgccgcgatccacggcaacaagagccagaacgcccgcaccaaggctttggccgat
ttcaaggccaacagcgtgcgcgtactggtcgccaccgacatcgctgcccgcggcctggac
atcgaccagttgccccacgttgtcaacttcgagctgccgaatgtcgaggaagactacgtc
caccgcattggccgtaccggccgtgccggtcgttcgggcgaagcaatttccctggtcgcg
ccagatgaagagaagctgctcaagagcatcgagcgggtgaccaagcagcgcatcgcggat
ggcgacctgatgggcttcgacgccagccaggtcgaagccgagaagcctgaaacacgcgag
cgcccgcaaaacaacggccgcggaggccgcagccagcaagcccgcggcgaaggtgccaaa
gacagcaacggcggccgcaaggacaaaggcaaggacaaaggcaaagccaggcagcaagct
gcggccaagccggacgacaaggaaaagagcggcgacaagcagcagcagccgcgcaagccg
cgtgacaagaagccacgcccacagcaggccagcaataacggcgtgccgaaaccgccagca
gaccgcgacccggaagagttcctggacgatgaagtcgataacttcggtaaccgcgccgac
tatgtcagtccgtaccagggcaagaaccagggccgcaaccgccgcccaggtggtgctggc
caaggtcaggggcaaggcaatggccaacgcagcaacgctggcggccagggccaagcccgc
aatggcggccagccacgcagtggtggcggagaaaaacgcccgccccgcgccaacaacggt
ggcggtgcccgtcgtgatggcggcggtggccgtggtcgccctgcgcgtgacgatgctgcc
cggcaagagccggccgtgcgcaacccgcgtcagccagaaaaacagccagtgatcattcgc
aaggagtccaaactggaccgcttcccgacgcctgagcaactggatgacctgccaagccgc
ccacgcggtgagcgcccggcgctgctgacccgcaagggctga
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