Pseudomonas putida DOT-T1E: T1E_1935
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Entry
T1E_1935 CDS
T02181
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T1E_1935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppx03021
]
T1E_1935
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_1935
Enzymes [BR:
ppx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T1E_1935
Transcription machinery [BR:
ppx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T1E_1935
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T1E_1935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFO47783
UniProt:
I7B8R6
LinkDB
All DBs
Position
complement(2113368..2117567)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDASGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLAGEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtaatctgcgagaagtgcggcgttgaagttgccctggcgaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgtgctctac
tttgagagctatgtcgttatcgacccgggcatgactaccctggaaaagggccagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgatgactttgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgcgaagaaattccgcagaccaactcggaaaccaagatcaagaagctttccaagcgt
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccagtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgtttt
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgccgtggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgtgttgactactccggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgactcttcaccgtctgggtatccaggcgtttgaacccgta
ctgatcgaaggtaaggctatccagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtattacatgacccgtgaagcgatcaatgcc
aagggcgagggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggctcggtggtcaagaacacccgcatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggttgtgccagcaggtctgccgtacgacgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggtctgaaagagaccgttatcttc
gccgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaacgctaccgacgaa
gtgaaggaaatcgagagccagtacgcctccggtctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgagacgccgatcact
gcgaacttccgtgaaggtctgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtctggcggataccgcactgaaaaccgctaactccggttacctgactcgtcgtctg
gtggacgttgcccaggatctggttgtgaccgagatcgactgcggcaccgatcagggcctg
gtgatgacgccacacatcgaaggcggcgacgttgtagagccgctgggtgagcgtgtattg
ggtcgtgtcatcgcccgtgacgtgttcaagccaggtaccgaggacgttatcgttccggcc
ggtaccttggtcgacgagcagtgggttgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcaactgcgaaacccgctacggcatctgtgccaagtgctacggt
cgtgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcc
gcaagccgtacttcggctgccgacagcgtccaggtgaagaatggcggtatggtgcgtctg
cacaacctgaagcaggttgagcgtgccgacggtaacctggttgccgtatcgcgttcgggt
gagttggcgattgccgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgaaaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacactcacccgatcgttaccgagctcaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagaccgatgaactgactggcttgaccaacattgaa
gtactggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccagcaatcaagatg
gtcgatgcctcaggcaaggacctgtacctgccaggtactgacgtacctgcccagtacttc
ctgccagccaacgcccttgtcggtgtggctgacggtgcgcagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacattaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcattcggtaaagagaccaagggcaagcgtcgcctggtgatcactccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggtgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcatgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggatgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtgttggtagagaacgagcgtctcgctggcgaggacaagttcatctcc
aagttcacccgtgtgctgctgggtatcaccaaggcctcgctgtccaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggctgtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggctggt
actggtctggcctaccacagcgagcgtaagcgtcgccgtgatgccgacaaaccgctgcgt
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaattccagcggtaactaa
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integrated database retrieval system
