Pseudomonas putida DOT-T1E: T1E_2608
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Entry
T1E_2608 CDS
T02181
Symbol
vacB
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T1E_2608 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppx03019
]
T1E_2608 (vacB)
03016 Transfer RNA biogenesis [BR:
ppx03016
]
T1E_2608 (vacB)
Enzymes [BR:
ppx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
T1E_2608 (vacB)
Messenger RNA biogenesis [BR:
ppx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T1E_2608 (vacB)
Transfer RNA biogenesis [BR:
ppx03016
]
Prokaryotic type
tRNA degradation factors
T1E_2608 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
CSD
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AFO48450
UniProt:
I7B0F4
LinkDB
All DBs
Position
2855076..2857649
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AA seq
857 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR
LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV
WPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPD
LKNLYNLYKVLVEARHTRGAIDFETQETRIIFGDERKIAEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSII
RSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFM
KDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRS
FRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKATP
KPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARSSAGSKSEKGGKPSGKPTKH
RKGPPKSGAPRKNKSNS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgacaac
cccattcccagccgtgagctgatcctgcagcgtctcgccgaccgaggcgaacctgctgcc
cgcgaggagctggcaaaagagttcggtctgtatgaagaagaccagatcgaagccctgcgc
cgccgcctgcgtgccatggagcgtgatggccagcttatctatacccggcgcggcacttat
gccccggtagacaagctggacctgatctgtggtcgcgtctccggccaccgcgacggcttc
ggcttccttattcccgatgacggcagcgaagacctgttcctcagcccgtcgcagatgcga
ctggtgttcgacggcgaccgtggcctggcccgcgtctccggtgtcgaccgccgtggccgc
cgtgaaggcgtgctggtcgaagtcatctcccgtgcccacgaaagcgtggtcggccgctat
ttcgaagaaggcggcatcggttacgtaaccccggacaacccgaagatccagcaggaagtg
ctggtgaccgccgggcgtaacggcggtgccaagatcggccagttcgtcgagatcaagatc
acccactggccaacgccgcgcttccagccgcaaggcgatgtggtcgaggtcatcggtaac
tacatggcgccgggcatggaaatcgacgttgccctgcgcagctacgacattccgcacgtc
tggcccaatgatgtggtcaaggaggcacgcaagttccgctccgaagtcgaggagaaggac
aaagagaagcgtgtcgacctgcgccatctgccgttcgtcaccatcgacggtgaagacgcc
cgcgacttcgacgatgccgtttattgcgaaccgctgggcaagctgcgtctgttctccggt
ggctggcgcctgtacgtggccatcgctgacgtgtccagctacgtgcgtctgggctctgcc
ctggatgtcgaagcccagcagcgcggcaactcggtttacttccccgagcgcgtggtgccg
atgctccccgaagagctgtccaacggcctgtgctcgctgaacccgcatgtcgaccggttg
gccatggtctgtgaaatgaccatgaacaaagccggccagatggtcgactaccagttctac
gaaggcgtgatccactcccatgcccgcctgacctacaacaaggtcagcagcatgctcgag
cactcgcgtacccgtgagggcaaggcgctgcgcgaggaatacaaggaagtcgtgcccgac
ctgaagaacctgtacaacctgtacaaggtgctggtggaggcacgtcacacacgtggcgcc
atcgacttcgaaacccaggaaacccgcatcatcttcggcgacgagcgcaagatcgccgaa
atccgcccgaccgtgcgcaacgatgctcacaagctgatcgaggaatgcatgctggcggcc
aacgtggccaccgccgagttcctgcagaagcacggcgtaccggccctgtaccgcgtgcac
gacggcccgccgccggagcgcctggaaaaactgcgcgccttcctcggcgagctgggcctg
agcctgcacaagggcaaggacccgtcgccgaaggattaccaggccctgctggcgagcatt
gccggtcgcccggacttccacctgatccagacggtgatgctgcgctcgctgagccaggcc
gtgtacagcaccgagaacaacggccacttcggcctgaactacgaggcgtacacccacttc
acctcgccgatccgtcgttacccggacctgctggtgcatcgcgccatccgcagcatcatc
cgctccaaggtcgataccccgcacgtcaagcgtgccggcgccatgagcattcccaaggcg
cgtatctacccgtacgacgaaaacaccctggagcaactcggcgagcagtgctcgatgacc
gagcgccgggccgacgaagccacccgtgacgtggtcaactggctcaagtgcgagttcatg
aaagatcgcgtgggcgagaccttcccgggtgtgatcacggcggtgaccggtttcggcctg
ttcgtcgagctgaccgatatctatgtagagggcctggtgcacgtcagtgcgttgccaggt
gactactaccacttcgacccggtacaccatcgcctggctggcgagcgcaccggtcgcagc
ttccgcttgggcgacaccatcgaagtcaaggtcatgcgtgttgatctggatgagcgcaag
atcgacttcgaagtgtcggaaaagacccttgccgcaccgatcggccgcaagcagcgtggc
gccgcgccggttgccgaaaaagccgagcagcagccggcaaccgaagcgaaagccacgccc
aagccgcgcagccgcaagagcgaagcgtccgaagcgtacttccccaaggatgctgtgcag
cgtaacgctgaagtgcgcaaaagccgcgagatgaagaaagcgctgatgaccgacgcgcgc
agcagtgctggcagcaaatcggagaaaggtggcaagccgtccggcaaaccgaccaagcac
cgtaaaggcccgccgaagtccggcgcaccacgcaaaaacaagagcaattcatga
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