Pseudomonas putida DOT-T1E: T1E_3961
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Entry
T1E_3961 CDS
T02181
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03420
Nucleotide excision repair
ppx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T1E_3961 (uvrD)
03430 Mismatch repair
T1E_3961 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_3961 (uvrD)
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T1E_3961 (uvrD)
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T1E_3961 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
T1E_3961 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
AAA_22
DUF5681
Motif
Other DBs
NCBI-ProteinID:
AFO49791
UniProt:
I7C9G2
LinkDB
All DBs
Position
complement(4329225..4331411)
Genome browser
AA seq
728 aa
AA seq
DB search
MRTDDLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSI
LSVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSD
DQQRLIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAY
EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLA
RGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALI
ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG
IGEKTVEAIREHARHSQLSMWEAMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPL
HTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGH
ASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGA
KTATNSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFAEGSKWLML
GYAKLEAV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacagacgacctctctctcctgctgaattccctcaacgatgcccaacgccaggcc
gtagcggccacgctcgggcgtcaactggtgcttgccggcgccggttccggtaaaacccgc
gtgctggtacaccgcatcgcctggctgatccaggtcgagcaggcatcaccgcactcgatc
ctgtcggtgacgttcaccaacaaggccgcagcagaaatgcgccagcggatcgagcaactg
ttgggcatcaacccggcaggcatgtgggtcggcaccttccacggcctggcccatcgcctg
ttgcgggcccactggcaggaagcgcggctggtgcagaacttccagatcctcgacagcgac
gaccagcagcgcctgatcaagcgggtcatgcgcgagttgggcctggacgagcagaagtgg
ccggcacgccaggcccagtggttcatcaatgggcagaaagacgaaggcctgcgcccgcag
catatccaggcggggggcgacctgttcctggcgaccatgcgcgaggtctatacggcctac
gagcaggcgtgcgagcgcgccggtgtcatcgatttctccgagctgctgcttcgcgccctg
gacctgtggcgtgaccatccgggcctgctggagcactatcaacgacgcttccgccacgtg
ctggtggacgagttccaggataccaacgccgtgcagtacgcctggttgcgcctgctggca
cgcggtggcgacagcctgatggcggtaggcgatgacgaccagtcgatctacggctggcgc
ggcgccaagatcgaaaacatccaccagtacaccgccgatttccccgacgccgaaatgatc
cgcctggagcagaactaccgctccaccggcggcatcctcaaggcggccaacgcgctgatc
gccaacaacagcgggcgcctgggcaaagaactgtggaccgacatgggcgaaggcgaacca
ctgaccctgtacgcggcctacaacgagcacgacgaagcgcgctatgtcgtggaaaccatc
gagagcctggtcaagcagggcaatgcgcgcaacgagattgccatcctgtaccgctccaac
gcccagtcgcgcgtgctggaagaggccctgctgcgcgagcgcatcccctaccgcatctat
ggcggccagcgcttcttcgagcgcgccgaaatcaagaatgccatggcttacctgcgcctg
atcgaagggcgtggcaacgatgccgctctggagcgggtgatcaacgtgccgccgcgcggt
attggcgaaaaaaccgtcgaagccatccgcgagcacgcccgtcacagccagctgtccatg
tgggaggccatgtgccagctgctcgccgccaaggccctgaagggccgcgccgccagtgcc
ctgggggcctttatcgagctgatcgaggggctggccgccaaggttgtggacatgccgctg
cataccatgacccagaccaccatcgaacagtccggcctgatcacctatcaccaggaagaa
aaaggtgaaaagggccaggcacgcgtagaaaaccttgaggaactggtcagtgcggcacgc
aacttcgagtccaccgacgaagacgccgacctgtctccgctctcggccttccttggccac
gcctcactcgaagctggcgatactcaggctgacgagcatgaagacagcatccagctgatg
accctgcacagcgccaaaggcctggagttcccctatgtgttcctggtgggcatggaagaa
ggcttgttcccgcacaagatgagcctggaagaacccggccgcctggaagaggaacgacgc
ctggcctatgtaggcatcacccgcgccatgcgccagctggtcatgacctacgccgaaaca
cgccgcctttatggcagcgagacttacaacaaggtgtcgcgtttcgtgcgtgaaattccg
gcaggcctggttcaggaagtacgcctgtccaacagcgtcagccgcccgttcggcggggcc
aagacggccaccaacagcaacctgttcgccaatgccagcattccgcagaccgcgttcaac
cttggccagcgtgtgcagcatgcagtattcggcgaaggcgtaatcctcaacttcgagggt
tctggcgctcaggcgcgggtgcaggtgaattttgccgaaggtagcaaatggctgatgctg
gggtatgccaagctcgaggcggtctaa
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