Pseudomonas putida DOT-T1E: T1E_4102
Help
Entry
T1E_4102 CDS
T02181
Symbol
rh28
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ppx
Pseudomonas putida DOT-T1E
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppx03009
]
T1E_4102 (rh28)
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T1E_4102 (rh28)
Ribosome biogenesis [BR:
ppx03009
]
Prokaryotic type
rRNA helicases
T1E_4102 (rh28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFO49931
UniProt:
I7C9V0
LinkDB
All DBs
Position
complement(4477787..4479109)
Genome browser
AA seq
440 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLN
RLVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK
VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTL
LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLAN
ETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT
DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER
YLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPKAN
APLASADGLAPLKKRKPAAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgttctcccaattcgccctgcatgaacgcctgcttaaagccgtggccgagcttaaattt
gtcgagccaaccccggtgcaggccgcggccatccccctggccctgcaagggcgggatctg
cgtgtgactgcgcagaccggcagcggcaagacggcggccttcgtactgccactgctcaac
cgtctggtcgacctcagcggtccgcgtgtcgagattcgcgcgttgatcctgctgccgacc
cgtgagctggcccagcaaaccctcaagcaggtgcagctgttctcgcagttcacctacatc
aagtcgggcctggtgactggcggcgaagacttcaaggaacaggccgccatgctgcgcaag
gtgcccgacgtgctgatcggcaccccgggtcgcctgctcgagcagctcaatgccggcaac
ctcgacctgtcccacgtgcaggtcctgatcctggacgaagccgaccgcatgctcgacatg
ggctttgccgaagacatggagcgcctgtgcaaagagtgcgagaaccgcgagcagaccttg
ctgttctcggctaccaccggtggcgcggccctgcgcgacatcatcggcaaggtgctgaaa
gaccctgagcacctgatgctcaacagtgtctcgcaactggctgaaggcacccgccagcag
atcatcaccgccgaccacgaccagcataaagagcagatcgcgcagtggttgctggccaac
gaaaccttcgacaaggcgatcatcttcaccaacacccgcgccatggccgaccgcatctac
ggtcacctggtggccaaggacgtgaaggctttcgtgctgcatggcgaaaaggaccagaag
gaccgcaagctggccatcgagcgcttcaagcagggcagctccaaagtgctggtggcgacc
gacgtggcagcccgtggcctggatatcgacggcctggacctggtgatcaacttcgacatg
ccacgcagcggtgacgagtacgtccaccgtgtgggccgtaccggccgtgccggtggcgaa
ggtctggcgatctcgctgatcacccacaacgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagcagttcgagcgccgggtcatcaaggaagtgaagggcacctacaacggg
ccgaagaaggtcaaggcctcgggcaaggcggccggcagcaagaagaaaaaggtcgagaag
aagaccggcgacaagaaagctgccgccaagcgcaagcctactgccaagccgaaggccaac
gcgcctctggccagtgcagatggcctggcgccactgaagaagcgcaagcctgctgctgaa
taa
DBGET
integrated database retrieval system
