Pseudomonas putida DOT-T1E: T1E_4602
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Entry
T1E_4602 CDS
T02181
Name
(GenBank) ECF subfamily RNA polymerase sigma-24 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
T1E_4602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppx03021
]
T1E_4602
Transcription machinery [BR:
ppx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
T1E_4602
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_28
HTH_23
MerR
HTH_11
HTH_17
HTH_29
HTH_24
GerE
Motif
Other DBs
NCBI-ProteinID:
AFO50429
LinkDB
All DBs
Position
5034160..5034687
Genome browser
AA seq
175 aa
AA seq
DB search
MPVADSPSPYPLEQLYSEHHGWLFSWLRRKLRCSHSAADLAQDTFVRILASRDALLGMRE
PRAYLSTTARRLLIDRVRRQQIEEAYLSELALAAEVLEGHQSPESILITLEALEQIAFLL
EGLHVNAREAFVGYYLDDLTQPQIAKRLQISPRMVRKYLAQALIHCHRTLDIAEP
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtagccgactcaccgagcccgtacccgcttgaacagctgtacagcgagcaccat
ggctggcttttcagctggctacgtcgcaagctgcgttgttcgcacagcgcagccgatctg
gcccaggacaccttcgtgcgcattctggcctcgcgtgatgccttgctgggcatgcgcgag
ccacgcgcctacctcagtaccactgcacgccgtctgttgatcgaccgggtgcgccgacag
caaatcgaagaggcctacctcagcgaacttgccttggctgccgaggtgctggaggggcac
cagtctcccgaaagcatcctcatcaccctcgaagcgctggagcagatcgcttttctgctg
gaaggcctgcacgtgaatgcccgcgaggccttcgtcggttactacctggacgacctgacc
cagcctcagattgccaaacgcctgcagatttccccacgcatggtgcgcaagtacctggct
caggccctgatccattgccaccgcacgctggacattgccgaaccgtga
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