Pseudomonas putida DOT-T1E: T1E_4911
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Entry
T1E_4911 CDS
T02181
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T1E_4911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppx03019
]
T1E_4911
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T1E_4911
Messenger RNA biogenesis [BR:
ppx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T1E_4911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFO50736
UniProt:
I7CBW1
LinkDB
All DBs
Position
complement(5361130..5362461)
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AA seq
443 aa
AA seq
DB search
MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR
KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE
VLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSSEAGS
AEPAVKAVRKVPSFNGGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgccaaactcggcctgatcgaaccgctgctgcgcacgctgcagcaactggac
tacaccaccccgaccccggtgcaggccaaagccatccccgccgtgctggccggccgcgac
ctgatggccgcagcccagaccggtaccggcaagaccgcaggctttgccctgcctgtgctg
cagcgcctggcgctggagggcgagaaggtggccagcaactcgatccgcgccttggtgctg
gtacccactcgcgagctggccgagcaggtgcacaacaacgtgcgcgaatacgccgagaac
ctgccgctgagtacttacgcggtgtatggcggggtcagtatcaacccacagatgatgcgc
ctgcgccggggtgtcgacctgctggtggctacccctggccgcttgctcgacctgttccgg
cagaacgccgtgaagttcaaccaggtgcagaccctggtgctggatgaagccgaccgcatg
cttgacctgggctttgccgaagagctgcagtcggtgtatgcggcactgccgcgcaagcgc
cagacgctgctgttttccgccaccttttccgatcagattcgcatgctggcggggctggcg
ctgaatgacccgctcagtatcgaagtgagcccgcgcaacgccacggccgccagcgtcaag
cagtggctggtgcctgtggacaagaagcgcaaggccgacctgttctgccacctgctgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacccgcaatggcgtcgatcagctg
gtggagcgcttgctggccgaaggcgtgaatgccgacggcatccacggtgatcgcccacag
gctactcgccagcgtgcgctggacagcttcaaggcccgtgaggtgcaagtgctggtggcg
accgatgtggcggcccgtggcctggatatcgatgacttgccgctggtcgtcaacctcgac
ctgccgatcgttgccgaagactacgtgcaccgcattgggcgtaccgggcgggcgggcaac
aagggcgaggcgatttcgctggtgtgtgcggatgaagtgcaactgctggcggctatcgag
gtgctgacccggcagaccctgccgcgtcatgaagagccggatttcatccccgagcaccgg
gtgccgatgaccgatgccagtgggcaggttatcaagaaaccgaagaaacccaagaagccg
aaagaaaacagcgccaagcgcgggctggggcgctggatggacagcagtgaagctggcagt
gcggaaccggcggtgaaggctgtacgcaaggtgccgagcttcaatggtgggccgcgcaag
cgcaagccttga
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