Pseudomonas putida DOT-T1E: T1E_4918
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Entry
T1E_4918 CDS
T02181
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppx
Pseudomonas putida DOT-T1E
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppx03019
]
T1E_4918 (hrpB)
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
T1E_4918 (hrpB)
Messenger RNA biogenesis [BR:
ppx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
T1E_4918 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
AAA_19
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFO50743
UniProt:
I7BG43
LinkDB
All DBs
Position
complement(5367096..5369624)
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AA seq
842 aa
AA seq
DB search
MISLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRL
AARAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGL
LIFDEYHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSE
GRMHPVDIRWGRPFQPGEFIEPRVVDSVLHALADQAGSVLVFLPGQAEIRRVHQSLQEAL
GARPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQ
ADLAGLALQLARWGVTPEQLRWLDQPPAAAFAQAQDLLARLSAFRPGSRDTLSEHGQAMA
ELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGADLHSRLALVSGESKAARG
GQGGVQRARQLARQYRGLLRGKVGAPVADPDHPRWLGALLALAYPDRVAQQRRAGGAEYR
LANGRAAQFGEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLEGVLAEQVERVD
ILDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARARALLGLVRRKGLNLLTWTPELR
QWQARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQPYLSKVSRLSHFAALDLPSML
RNLLPWPLPQRLEEQAPAHLAVPSGSNIRLDYSETPPILAVRLQELFGLADTPRIANGRQ
QVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPR
GR
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatttcattacccattgatgctgccttgcccgccctgcgccaggctctggaaaaccgt
gacgaagtggtgcttgaagcgccgcctggcgctggcaagaccacccgcgtgccactggcg
ctgctgcacgaaccgtggctggccgggcagagcatcctcatgctcgagccacggcgcctg
gctgcgcgggcagcggccgaacggctggccagtgagctgggcgagcaggttggggaaacg
gtgggttaccgcatccgtctggacagcaaggtcggcccgaaaacccgtattgaagtggtg
accgaaggcatcctcacacgccgcctgcaagccgacccggcgctggaaggggtgggcctg
ctgattttcgacgaatatcacgaacgcagcctggatgccgatctcgcacttgcgctgagc
cttaacggccgcgagttgctgcgtgacgacccgcccctgaagattctgctgatgtcggcg
acgctggaaggtgagcgcctgtcgcggctgttggacgacgccccggtggtcagcagcgaa
gggcgcatgcatccggtggatatccgctgggggcggccgttccagccaggcgaattcatc
gagccacgggtggtggacagcgtgctgcatgcgctggctgaccaggccggcagcgtgctg
gtgttcctgcctgggcaagccgagatccgccgggttcaccaaagccttcaggaggcgctg
ggggcgcgccccgagattctgctgtgcccgctgcatggcgagctcgacctcaatgcccag
cgcgccgctatcgacccgccggccaagggcctgcgcaaggtggtgctggccaccaacatc
gctgagaccagcctgaccatcgatggcgtgcgcgtggtgatcgacgcaggcctggcccgg
gtgccgcgcttcgaccccggcagcggcatgacccgcctggacacccagcgcatttcccgc
gccagtgccacccagcgcgctgggcgtgccggccgcctggagcccggcgtgtgctaccgc
ctttggtccgaggcccagcatgaccagttggccgcccatgggagtgccgagattcttcag
gccgacctggccgggctggccctgcagctggcgcgctggggtgtaacccccgagcagttg
cgctggctcgaccagccaccggctgcagcgttcgcccaggcccaggacctgttggcgcga
ctcagcgccttccggccgggcagccgcgacaccctcagcgaacatggccaggccatggcc
gaactgccggctcacccacgcatcgcgcacttgttgctgcggggtcaggacctgggcctg
gcacagatggcctgcgatgtggctgcactgctgggggagcgggacatccagcgtggcggt
ggtgccgacttgcacagccggcttgcgctggtcagcggtgagagcaaggctgcgcgtggc
ggccaggggggtgtgcagcgtgctcgtcagctggcacggcaataccgtggcctgttgcgt
ggcaaggtcggtgcaccggttgccgacccggaccacccgcgctggctgggcgccctgttg
gcgctggcctaccctgaccgggtcgcccagcagcgccgggcgggcggggcggagtatcgg
ctcgccaacggccgtgcggcccagtttggcgaagtcgatgcattgatgaagtgcccatgg
ctggtgatcgccgacctgggtagccgccaggggcagcgtgaggagcggatctatctggcc
gccgaattcgatccggcgttgctcgagggtgtgctggccgaacaggtcgagcgggtcgat
atccttgattgggacgagcgcgagcaggtgttgcgcgccgagcgccaggtgaaggttggc
gaactggtcctcagccgcgagccgctgcccgggctggatgatgaagccagggcccgagcg
ctgcttggcctggtccggcgcaaaggtttgaacctgctgacctggacgccggaactgcgg
caatggcaggcacgtgtggcgctgttgcgtcagctcgacctgcagaaggatggccacagc
gaatggcctgacctgggggacgaagccctgctggccagcctggaagactggttgcagcct
tacctgagcaaagtatcgcgcctcagccactttgccgcgctggacttgccgtcgatgctg
cgcaacctgctgccctggccgctgccgcaacgcctggaagaacaggccccggcgcatctg
gccgtgccgtccggctcgaacatccgcctggattacagcgaaaccccgccgattctcgcc
gtgcgtctgcaagaactgttcggccttgccgataccccgcgcatcgccaacggccggcag
caggtcaagctgcacctgctgtcaccggcacgtcggccggtgcaggtgacccaggacctg
gccagcttctggcgcacgacctatgccgaggtgaagaaagacctgaaagggcgctatccg
aagcattactggccggacgaccctctggtggccgaggctacggcgcgggccaagccgaga
gggcgctga
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