Pseudomonas putida DOT-T1E: T1E_4957
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Entry
T1E_4957 CDS
T02181
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03030
DNA replication
ppx03430
Mismatch repair
ppx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T1E_4957 (dnaE)
03430 Mismatch repair
T1E_4957 (dnaE)
03440 Homologous recombination
T1E_4957 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppx03032
]
T1E_4957 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_4957 (dnaE)
Enzymes [BR:
ppx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
T1E_4957 (dnaE)
DNA replication proteins [BR:
ppx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
T1E_4957 (dnaE)
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
T1E_4957 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AFO50782
UniProt:
I7C2Y3
LinkDB
All DBs
Position
5405942..5409466
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWI
APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEY
VHAAVALADKLGAPLVATNDVRFIKQTDFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccattccgaattctcgctggtcgacggcctg
gtgcggatcaaaccgctggccaaggcgctgaccgggatgaacatgccggcggtcgcgatc
accgatcagagcaacatgtgctcgctggtgaagttctacaagacggccatgggcgccggc
atcaaaccgatctgcggtgccgacctgtggctggccggtgccgacccggaagccccgctg
tcgcgcatctgcttcctggccatggaccccaagggctatcgcaacctcaccgaactgatc
tcgcgcggctggaccgatggccagcgcaatggcctggtcatcctccagcgtgaatggatc
gccccggccagcgagggcctgattgccctgtccgcgggcaaggaaggcgacattggcatg
gcgctgctggcgggtcggcaagacgaagccgaagcgcttcttcaagactggatgggcatg
ttccccgagcgcttctatgttgaagtgcagcgcaccaatcgggcacgcgacgaagaatac
gtgcacgcggcggtcgcattggccgacaagcttggcgccccgctggtggctaccaacgac
gtacgtttcatcaagcagacggacttcgacgcccacgaaacccgcgtatgcattggcgag
ggatggacccttgacgacccgcgccgtccgcgttgctacagcgaccagcagtacctgaag
tcggccgaggaaatggccgagctcttcagcgacctgcccgacgccatcgccaacaccgtc
gaaattgccaagcgctgcaacatccaggtacagctgggcaagtacttcctgcctgacttc
cccacgcccaacggcatgggcatcgacgactacctgcggcatgtgtcccacgaaggcctg
gaagagcgcctggccgtgctgtggccgaaagagaccacgcccaattatgaagaaaagcgt
caggtttacctggaccgcctgaagttcgagctggacatcatcatccagatgggcttcccc
ggttacttcctgattgttatggacttcatcaagtgggccaagaacaacgacgtaccggtt
ggcccgggccgcggttcgggtgctggctcgctggtggcctatgtactgaagatcaccgat
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgggtgatcgactacgtg
gccgaggcctacggccgtaatgcggtgagccagatcatcaccttcggtaccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcaaggcaaatcctatggcctggccgaccgc
ctgtcgaagatgatccccttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgtgacttcctcaagggcgacgaagacgcccgtgaaatctgggacatggcc
ctgaagctggagggtgtgacccggggtaccggcaagcacgccggtggtgtggttatcgca
ccgaccaagctcaccgacttttcgccgatcgcctgtgatgaagagggtggtggcctggta
acccagttcgacaaggatgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcgtaccttgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgacctcaacatcgacttcatcccgctggacgaccgcaagacctacgag
ctgctgcagaaggccgaaaccacggcggtgttccagctggaatcgcgcggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggttgcgttgttc
cgcccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctggcctacccgcactccgactaccagtacgaaggcctcaagccggtactggcg
ccaacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggca
ggttataccctgggtggcgccgacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggtttcatcgaaggttgcgtagccaacaatatcgatgcg
gacctcgccggtaacatcttcgacctggtagagaagttcgcgggctacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcctggctgaaaacccactac
ccggcgccgttcatggccgcggtcctgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtggaggaggtgcgcagcatgaagctgcgcctcgacgcgccggatgtgaacttc
tcggacttcaagttcaccgtcaacaacgacggccgtatcgtctacggccttggtgccatc
aagggtgtcggcgaaggcccggtggaggcgattgtcgaggcccgtgcccaaggcggtccc
ttcaaggacctgttcgatttctgtgaacgcatcgacctcaaacgggtcaacaagcgtacc
cttgatgcgctggtgcgcagtggcgcgctggaccgccttggcccgcacttccatgacgag
atcaaggcctaccacgccaacatcgacatcaaccgggcaaccttgctgtcggcgctgggc
gaggccatcaaggcagccgagcaggccgcacacaccgctgacagtggccatgtcgacctg
ttcggcagcatgttcgacgcggcagatgtcgatgtgtatgccaaccaccgcaaggtgcgc
gagctcaccctcaaggagcgtctgaagggggagaaggacacccttggcctgtacctcacc
ggccacccgatcgacgagtacgagaccgagatccgtcgcttcgcccgccagcgcatcgtc
gacctcaagccgtcgcgcgaaacccagaccatcgcgggcatgatcattgcgctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggatgaccgttccgggcgg
atcgaggcatcgctgtttgccgatgccttcatggcggcacagtccttgctgcagaccgac
gcgatggtggtggtggaaggcgaggtcagcaatgacgacttctccgggggcttgcgcctg
cgggtgaagcaggtgatgaccatggaagacgcacgcaccaagctggccgagagcctgcgc
ctgaaggtggcgcatgacgcactgaagggcgaccggctgaagtggctgggcgagctgatc
acccgccatcgcggtgcctgcccgatcacgctggagtacaccggcagcgacgccaaggcc
atgctgcagtttggcgagcagtgggcgatcgatccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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integrated database retrieval system
