Pseudomonas putida DOT-T1E: T1E_5379
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Entry
T1E_5379 CDS
T02181
Symbol
hupB
Name
(GenBank) histone family protein DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ppx
Pseudomonas putida DOT-T1E
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppx03032
]
T1E_5379 (hupB)
03036 Chromosome and associated proteins [BR:
ppx03036
]
T1E_5379 (hupB)
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_5379 (hupB)
DNA replication proteins [BR:
ppx03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
T1E_5379 (hupB)
Chromosome and associated proteins [BR:
ppx03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
T1E_5379 (hupB)
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
T1E_5379 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
AFO51200
UniProt:
I7B7N8
LinkDB
All DBs
Position
complement(5854269..5854541)
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AA seq
90 aa
AA seq
DB search
MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG
RNPQTGKAIKIEAAKVPGFKAGKGLKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagtcggaactgattgacgctatcgccgcatctgcagacatcccgaaagctgta
gccggccgtgcgctggacgcagtcatcgaatccgtcaccggcgccctgaagcaaggtgac
gatgtggtactggttggctttggtaccttctcggtcaaggagcgcgccgagcgtaccggc
cgcaacccgcaaaccggcaaggcaatcaagatcgaagccgccaaggttccaggtttcaag
gcaggcaaaggcctgaaagacgccgtcaactaa
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