Paenibacillus polymyxa E681: PPE_00139
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Entry
PPE_00139 CDS
T01319
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_00139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppy03021
]
PPE_00139
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_00139
Transcription machinery [BR:
ppy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PPE_00139
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PPE_00139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA
AAA_22
OB_RNB
Spore_III_AA
S1CSD-TOTE-2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ADM68037
LinkDB
All DBs
Position
173422..174759
Genome browser
AA seq
445 aa
AA seq
DB search
MDLQISDLEEMKLTDLYKLAKQYQIPYYGTLKKKELIFAILRAQAEKSGLMFMQGVLEIL
PEGYGFLRPINYLPSTEDIYISASQIRKFDLRTGDLVSGKCRTPKENERYFGLLQVNAVN
GRSPEQAAERLHFPALTPLYPQTKLVLETSPNHLSTRIMDVLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISTNNPEIELFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA
ELVLERALRLVEHKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGA
ARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRS
GTRREEVLLNKEELDTIWAIRKNMTESHDFVEGFLKKLRNSNTNAEFLASFDLTAPSSSG
SQSSSGGQQRRTARSTTASVPATTN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcaaatttccgatctggaagaaatgaagctgaccgacctgtacaagctggcc
aagcaataccagatcccgtactacggaacgctcaaaaagaaagaattaattttcgccatc
ttgcgcgcacaagctgagaagagcggattgatgtttatgcagggggttctggaaatcctc
cccgaaggctacggctttctgaggccgatcaattatctcccgagtaccgaagatatttac
atctctgcttcacaaatccgcaagtttgacttgagaacaggcgatcttgtttctggtaaa
tgccgaacgccaaaagagaatgaacgatattttggattgcttcaagttaacgccgtcaat
ggaagaagtcctgagcaagctgctgagcggctacattttcctgcactgactccactgtat
ccgcaaaccaaattagtccttgaaacttcccccaaccatttgtctacgagaattatggat
gtactggcccctgtcggacttggacagcgcggactcattgtagcacctcccaaagctggg
aagacgcttctcctcaaagaaattgccaatagcatttctactaacaatcccgagatcgag
ctttttgtcttgttgattgatgaacgccccgaagaagtgaccgacatgcagcgttctgtt
aaaggtgaagttgtggcctctacatttgacgaacttcctgaaaatcacatcaaagtggca
gaactcgtgttggagcgtgcgctgcgtctcgtagaacataaaaaggatgttgtcatcctg
ctggatagcatcacacgtttggctcgtgcgtacaatctcgttatccctccttctggtcgt
actttgagcgggggtattgatccggcggcatttcaccgtccaaagcgcttttttggtgcg
gctcggaatgtggaggaaggcggtagcttgacgattcttgctacagcgctgattgacaca
ggatcacgcatggacgatatcatctatgaggagtttaaaggtacaggcaacatggagctg
catttggaccgcaagctggcagaacgtcgtatctttcctgcgattgatattcgtcgttcc
ggcacacgccgtgaggaagtgttgttgaataaggaagaattggataccatctgggccatt
cgtaaaaatatgacggaaagccatgattttgtggaaggcttcctcaaaaagctgcgtaat
agcaatactaatgctgagtttttggcttcgtttgatttgaccgcaccttcttccagtggc
tcgcaaagcagttctggtgggcaacaacggagaactgcgcgttctaccacagcgtcagtc
ccggccacaaccaactaa
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