Paenibacillus polymyxa E681: PPE_00559
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Entry
PPE_00559 CDS
T01319
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03420
Nucleotide excision repair
ppy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPE_00559
03430 Mismatch repair
PPE_00559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppy03400
]
PPE_00559
Enzymes [BR:
ppy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPE_00559
DNA repair and recombination proteins [BR:
ppy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPE_00559
MMR (mismatch excision repair)
Other MMR factors
PPE_00559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
YdjO
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADM68413
LinkDB
All DBs
Position
complement(615115..617541)
Genome browser
AA seq
808 aa
AA seq
DB search
MDPNPSFYPRPIGVPYSTSSPQARRASMDTSMTLVPDTDQDSAYFRALENAGIHLNRPQI
QAVRHGKGPLLTLAGAGCGKTTVLAARAGYLMAMRDVPASSILLVTFTSKAAAEMKLRIA
GLPGVRPAAARAVQARTFHSFALAMLRHRGVQDEVFGETQAQHTVMKMMLRQLGLSEAFQ
PESLLSALSAWKAEGRSADELPESVREESDAKRAMLAYEAWKQERNKMDFDDILLRASAL
LRDPDVLQPLQRRFSHIMVDEFQDTNALQYEMVQRLAARHRNLMVVGDDDQTIYTFNGAR
QESILEFDKVYKDAKVITLDINYRSDARILGLGSNIVAKNVHRRSKRLSAAGREGLPPQF
ATPSGPEEEAGHIVTHLLGQVEEGRLRYRDIAILHRTASGSRSIFEQLIMRDVPFIQYGA
GAVFYDQSLIRPLMDHLRLSLNPRRMESIPSTLGPLYVSREAGMEWIMREEKQQAKKYPL
IHLSRWDRLRDFQREQVKERIRLIRSLTTMKPAYAIQEMRRVFYDKYLESGDTGAWTHYK
ETMQESLEELETAAKRFDTVEAFVSFADELSERHRQMESLRREEDSDAVRLMTIHRAKGL
EFPCVYWIGASEGILPHSSALHSELPEDRRAGAAPTTAVDNDAALEEERRLAYVAVTRAK
ELLYITSPASNHGKPAAVSRFLLEAYGVTPETSKPETRRSSFGQPKGASGYSNRAGAGSP
ASGTATRVSSRPGPGSATARTTSSVAGSPAEPRINVPVWKCTDGACKAWMRRDTTSGRRT
SAASTGTPPVCPLCASPMTEGTRSIPAR
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggacccaaatccttctttttacccccgacccatcggggttccttattcaacgtcgagc
cctcaggcacgtcgtgcttccatggataccagtatgacgctggtgcccgacaccgaccaa
gactcggcctattttcgtgctttagagaacgccggcattcacctgaaccgcccgcagatc
caggccgtccgccacggcaaaggcccccttctgacccttgcaggggctggctgcggcaaa
accacagtgctggctgcccgcgcaggctacctgatggcgatgcgggatgtccctgcatcg
tccattctgctggtgaccttcaccagcaaggcagctgccgaaatgaaactgcgcatcgcg
ggattacccggtgtgcgccctgccgctgcacgtgcagttcaggcacgcacgtttcactca
ttcgctttggcgatgctgcgtcatcgcggcgtgcaagatgaagtgttcggtgaaacgcag
gcccagcataccgtcatgaaaatgatgctgcggcagcttgggctcagcgaggctttccag
ccagaaagcctgctgtctgccctctccgcctggaaagcggaaggccgcagcgcggacgag
ctgccggaaagcgtgcgcgaggaatcggatgccaagcgtgccatgctcgcctatgaagca
tggaaacaggaacgcaataaaatggattttgacgatattctgctgcgtgcctccgcactg
ctgcgtgacccggatgtgcttcagccgcttcagcggcgtttttcacatatcatggtcgat
gaatttcaggatacgaatgccctgcaatatgagatggtacagcgattggctgcccgacat
cgcaatctgatggttgtgggggatgatgatcagacgatctatacctttaatggggcacgc
caggaatccattctggagtttgacaaggtctataaggatgcaaaagtcattaccctggat
attaattatcgcagcgatgcgcggattttggggctgggctctaatattgtcgccaaaaat
gttcatcgacgctccaagcgtctttcagctgctgggcgtgagggcttgccgccgcagttt
gctaccccatccgggccggaggaagaggcggggcatatcgttacccatctactcgggcag
gtagaggaaggtcggctgcgctaccgggatatcgctattttgcaccggacagccagcgga
agccgatctatttttgagcaattaattatgcgggatgttccatttattcagtacggagca
ggggctgtattttacgatcagtccctgattcgtcccttaatggatcacctacgcttgtcg
ctgaatccccggcgtatggaatccattccgagcacccttgggccgctgtacgtctcccgt
gaggcgggtatggaatggattatgcgcgaggagaaacagcaggctaaaaaatacccgcta
attcatctcagccgctgggatcgactacgtgattttcagcgtgagcaggtgaaagagcgt
attcgtctgattcgcagtctcactacaatgaagcctgcctatgccattcaagaaatgcgg
cgcgtcttttatgacaaatatttggaaagcggggatacgggcgcgtggactcattataag
gaaacgatgcaagaaagtctggaggagctcgaaacggcagccaagcggtttgacaccgtg
gaggcgttcgtcagctttgcggacgagctttccgagcgccaccgccagatggaatcgctg
cgcagagaagaagacagcgatgctgttcggctcatgacgatccaccgcgccaaggggctg
gaattcccttgcgtatattggatcggagccagcgagggcattctgccgcacagctcggcg
ctgcacagcgagcttccggaggatcggcgggcaggcgccgccccgactacggctgtggat
aacgatgcagcgcttgaagaagagcgccgcctcgcttacgtggccgtcacccgggcgaag
gagttgctgtacattacctctcccgcctctaatcatggcaagcctgccgccgtgtcacgc
ttcctgctggaagcctatggggtcacccccgagacttccaagccggaaacacgccgcagc
agtttcggccaaccaaagggtgcttccgggtatagcaaccgggctggcgctggatcgcca
gcgtctggcactgcgacccgcgtgagcagcagaccgggaccaggcagcgctacggcacgg
acgacgtcgtcggtggcagggtctccggcggagccacgcatcaacgtgcccgtgtggaaa
tgcaccgacggtgcctgcaaagcgtggatgcgtcgcgacacaacaagcggacgccgtaca
agcgcggctagcacaggcacgccgccagtgtgcccgctctgcgcctccccgatgacagag
gggacacgcagcatcccagccagatag
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