Paenibacillus polymyxa E681: PPE_00687
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Entry
PPE_00687 CDS
T01319
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_00687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_00687
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPE_00687
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
ADM68541
LinkDB
All DBs
Position
749876..751546
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AA seq
556 aa
AA seq
DB search
MHADNRLLIAALGGVNEIGKNMYFIQYDQDIVVIDCGSKFPDENLPGIDLIVPDVTYLLE
NQDKVRALIVTHGHEDHIGGIPYLLKQINMPVYGTKLTIELIKIKLREHNLLRDAELHLI
DADSTVQAGTIQASFFTTVHSIPDCLGVFFQTPEGNVVHTGDFKFDMSPVSGPFPDLHRM
AEIGKQGVKVLLSESTNAERPGFTPSERLVGGHILDAFARAKQQVFISTFASNVNRVQQV
IDAAVETGRKLVLLGRSMINVVSVAKELGFLHMPEDLLIEAGETERFPAEEIAVLCTGSQ
GEPMAALSRLANSLHPRIEILPGDTVIIAAGAIPGNERNLSQVIDNLYVLGANVIYGSGS
TTGMHVSGHGSQEELKLMMTLMKPEYLIPIHGEFRMLYQHRQLAESVGIPMENVFIVHNG
DTVQIEEGRASLGPKVSAGNSLVDGLVTGDVGNIVLRDRKKLSSDGMLIIVMTLSKNEKQ
MLATPEVISRGFVYVKDSEELMSQIHDTIMSTVNELTEIEMSQWGLIKQMLKDDVGRFIY
SQTKRRPMILPIIIEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcatgctgataatagattactcattgctgctctaggcggtgttaatgaaatcgggaaa
aacatgtattttatccaatacgatcaggatattgttgttatcgattgtggctccaagttt
cctgatgagaacttgcctggtattgacctcattgtgccggatgtcacctatctgctggaa
aatcaggataaagtcagggcgctcattgtgacacacgggcatgaggatcacataggaggt
attccctatttgctgaagcaaattaatatgcccgtttatggcacaaagctcaccatcgaa
ttaattaagattaagttaagggagcacaaccttttacgtgatgctgagcttcatcttata
gatgcggattcaaccgttcaagcgggaacgattcaggcatcctttttcactaccgtccac
agtatcccggattgcctgggtgttttttttcagacaccggaaggaaatgtggtccatacc
ggggatttcaaattcgatatgtctcccgtcagtggacctttccccgatcttcatcgcatg
gccgaaattggaaagcaaggggttaaagtgcttctttccgaaagtacaaatgcggaaagg
ccaggatttactccttcagaacgtttggttggcggacatattttggatgctttcgccaga
gccaaacagcaagtatttatttctacgtttgcatccaatgtgaaccgtgtccagcaagtc
attgacgcggctgtggaaacaggcaggaaactcgttctactgggacgcagcatgataaat
gtggtgtcagtggctaaggagctgggtttcttgcacatgcctgaggacttgttgattgag
gcgggagaaacagaacgttttcctgcagaggaaattgctgttttatgtacaggaagtcag
ggtgagccgatggctgcactatcccgtctagccaattccttgcatcccagaatcgaaatt
ttgcctggtgatactgtaatcattgctgcaggagccatacctgggaatgaacggaatctt
tcccaagtcattgataacctgtacgtactgggcgccaacgttatttatggatcaggcagt
acaacagggatgcatgtatccggtcatggcagccaggaagaattaaaattaatgatgacc
ctgatgaaacctgagtatttgattcccatacacggtgaattcaggatgttgtatcagcat
cgtcagctagcggagtctgtagggattccgatggagaatgtatttatcgtccataacggt
gacactgttcaaatcgaagagggaagagcatccctggggcccaaagtatcagccggcaat
agcttggtagacggattggtgacaggggacgtaggtaatattgtactgcgagaccgtaaa
aagctttcttcagacggaatgctgattattgtgatgacgttgagcaaaaacgagaaacaa
atgctcgcaacaccagaggtcatttcaagaggctttgtatatgttaaggattccgaagag
ctcatgagtcagatccacgacacgattatgtccacagtgaacgagctaacagaaatcgaa
atgagtcagtggggactgattaagcagatgttaaaagatgatgttggccggtttatttac
agtcagacgaagagaagacccatgattttgcctatcattattgaggtatag
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