Paenibacillus polymyxa E681: PPE_01309
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Entry
PPE_01309 CDS
T01319
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_01309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_01309
03400 DNA repair and recombination proteins [BR:
ppy03400
]
PPE_01309
Enzymes [BR:
ppy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPE_01309
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPE_01309
DNA repair and recombination proteins [BR:
ppy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPE_01309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ADM69151
LinkDB
All DBs
Position
1408503..1410401
Genome browser
AA seq
632 aa
AA seq
DB search
MSVQAPTLERAQDLLQKFYGYPDFREGQKKIVASMLEGNDTLGIMPTGGGKSICYQIPAL
LHEGLTIVVSPLISLMKDQVDALTTMGIAAAYINSTLSGREVNDRIRAARNGDLKLLYVA
PERLELDWFRDEMAQLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDGLYERPIVAAFT
ATATPQVMDDIVRLLRLRSPETFVTGLGRPNLAFSVLRGEDKRSFLLNYAREHEGESGII
YAATRKDVDDLYQRLRDAGMAAGRYHAGMTDQERADSQEGFLYDDIRVIVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGDPSQCILLFGPQDIVTQKFLIEQNPQDEDR
KRNDYRKLQQMIDYCYTTRCLRTAQLEYFGEAEEHEACGICSSCTDERELVDMTIDAQKI
FSCIHRMRERYGVSMVASVLKGSRNKKVLQYGFDSLPTYGVMGNRTEKEIAEIINVLVSE
GYLMLSEGQYPVVRLQQLAAEVLKGQREVMQRVVRHATAFAGGAGSRGRQGRDAYPAAVN
ETVFEQLRLIRRDLAAQEHVPSYIIFNDATLREMSVASPQSEADMLRIKGVGEVKFRKYG
KPFLDFFQNQGNIGGTISEDEIFTDDVYEDFE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacaagcaccaacattggaacgggcgcaggacttgctgcaaaaattttatggc
tatcccgatttccgggagggacaaaagaaaattgtggccagtatgctggagggcaacgat
acgttgggcatcatgccgacaggaggcggaaaatcgatatgctaccagatccccgcgttg
ttgcatgaggggctgaccattgttgtgtcaccgctcatctcgttgatgaaagaccaggtg
gatgcgctgaccacaatggggattgctgctgcctacatcaatagtacgttgagtggtcga
gaagtgaatgaccgcatacgagctgcacgaaatggtgacttgaagttgctgtatgtcgca
ccggaacgactggaactggactggtttcgcgatgaaatggctcagttgcccatttcctgc
gttgcggtagatgaggctcactgcgtatcccagtggggccatgatttccgtaccagctat
ctggctgtggctccattcgtggacgggctgtatgaacgcccaatcgtggcggcgtttacg
gcaacggcgacaccgcaggtcatggatgatatcgtgcgcctgcttcgtctgcgctcaccg
gagacgttcgttacaggccttggacgacccaatttggcgttcagtgtgctgcgcggggaa
gacaaacgcagctttttactgaattatgcccgtgagcatgagggtgaatcgggcattatt
tatgcggcgacacgtaaggacgtggacgatttgtaccaacggctgcgagacgcaggcatg
gcggctggacgctatcatgccgggatgacagatcaggaacgtgcagatagccaggaaggg
tttctgtacgatgatatccgtgtcattgtagcaaccaatgccttcggcatggggatagat
aaatcgaacgtacgctatgtcattcactacaacatgcctaaaaatatggaggcttacgta
caagaggcgggacgcgcaggacgtgatggcgacccgagtcaatgtattttgctgttcgga
ccgcaagatattgtgacgcagaagttcctgattgagcaaaatccacaagatgaagaccgc
aagcgcaacgactaccgcaagctccagcagatgattgattattgctacacgactcgttgc
ctacgtacggcacagcttgagtatttcggagaagcggaagagcatgaagcttgcggcata
tgcagttcatgtacagatgagcgggaactggttgatatgaccatagatgcgcaaaagatt
ttttcgtgcattcatcgcatgcgggaacgttatggggtctcgatggtcgcctcggtgttg
aaaggctcgcgtaacaaaaaagtgctgcagtatggttttgacagcctgccaacctatggg
gtgatgggcaaccggacggaaaaagaaattgccgaaattatcaatgttcttgtttcggaa
ggctatctgatgttgtccgaggggcaatatccggtcgtacgcttgcagcagcttgcggct
gaagtgctgaaaggccagcgagaagtcatgcagcgtgtggtgcgacatgccacggctttt
gcaggtggagcgggttcacgtgggcgacagggacgcgatgcatacccggctgcagtcaac
gaaaccgtgttcgagcaattgcgcctgatccgccgcgatttggccgcccaggagcatgta
ccgtcttatatcattttcaatgatgcgacgctgcgtgagatgagcgtagctagcccgcaa
tccgaggcagacatgttgcggatcaagggtgtcggcgaagtgaagttccgcaagtacggc
aagccgtttcttgatttttttcaaaatcaagggaatatcggaggaacgataagcgaggac
gagatttttacagacgatgtgtatgaggattttgaatag
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