Paenibacillus polymyxa E681: PPE_01706
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Entry
PPE_01706 CDS
T01319
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_01706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_01706
03009 Ribosome biogenesis [BR:
ppy03009
]
PPE_01706
Enzymes [BR:
ppy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPE_01706
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPE_01706
Ribosome biogenesis [BR:
ppy03009
]
Prokaryotic type
rRNA helicases
PPE_01706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
CMS1
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADM69543
LinkDB
All DBs
Position
1816642..1818231
Genome browser
AA seq
529 aa
AA seq
DB search
MTTFAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPL
INKISRSDEKIRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML
FSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVTR
HRIPRKPLPTLAEALEGKQRIIAERLLEAVESGELNEYKGLAIQMLEQYDSVQLLSAALK
LMTGEKREASIELTPEDPIRAKRRKPDVRSGGRKPSNYSGRSNGGYNSNRSGGTGGSGSK
GGYGASNRGKEGGGYNRDSGSRYSGDRKPRPSSNGETRRPARREDSSSE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttgcagaatttgatcttgaaccgaaagtaattcaggcgattacagaactg
ggttttgaagaagcaacaccaattcaatcccaatccatcccgattgcactgcaaggcaga
gacatgattggtcaagcccaaacaggtactggtaaaaccgctgcgtttggtattccgctg
atcaacaaaatttctagaagcgacgaaaaaatcagagccctaatcatggcaccaacacgt
gagcttgctatccaggtagctgaagaaatcgaaaaactctcccgtttcaaaggtcttcgt
actttgccaatctatggtggacaagatatcgtacgccagattcgtgctttgaaaaagaaa
cctcaaattattattggtacgccgggacgcttgcttgaccatattaatcgcaaaaccatc
aagctggaagatgtaaacacagttgttttggatgaagcagatgaaatgttggatatgggc
ttcatggaagatattcaatccattctgaagcaagttccagacgagcgccaaacgatgctt
ttctcggctacaatgcctgctaatattaaaagattggctgagcaattcctcaaaaatcct
gagcatgtttcagttattcctaaacaagttagtgctccactgattgatcaggcctatatc
gaagttcctgagcgtcaaaaattcgaagcattgagccgtttgatcgacatggaatcccca
gaacttgctatcgtatttggtcgtaccaagcgtcgggtagacgagctggctgaagctctg
caaaaacgcggatattctgcagacggtttacacggtgacttgtctcaaaaccaacgtgat
gctgtaatgcgtaaattccgtgacggaagcatcgacgtgctcgtagcgactgacgtagct
gcccgtggtttggacgtttccggcgtaactcacgttgtaaactttgaccttccgcaagat
ccagaaagctatgttcaccgtattggacgtactggacgtgcaggtaaagaaggggaagct
tggtctttcgtaacgcctcgtgaaattgaccatctgcactttatcgaacgtgtaactcgt
caccgcattccacgcaagccgcttccaacgttggctgaagctctggaaggcaaacaacgt
atcattgctgaacgtctcctagaggctgtagaaagcggtgagctgaacgagtacaaaggt
ttggctattcaaatgctggagcaatatgattctgtacaacttctctccgcagctctgaaa
ctgatgactggtgagaaaagagaagcatcgattgagctgactccagaagatccgatccgt
gcaaaacgtcgtaaaccagatgtgcgttctggcggtcgcaagccttccaactatagcggt
cgcagcaacggtggttacaattccaaccgttctggcggtaccggtggtagtggaagtaaa
ggtggatatggcgcttccaaccgtggcaaagaaggcggtggctacaaccgtgattccgga
agccgctacagtggagatcgtaaaccacgcccgagcagcaatggagaaactcgtcgtcct
gcaagacgtgaagattcctcttccgaataa
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