Paenibacillus polymyxa E681: PPE_01876
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Entry
PPE_01876 CDS
T01319
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppy
Paenibacillus polymyxa E681
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppy03032
]
PPE_01876
03400 DNA repair and recombination proteins [BR:
ppy03400
]
PPE_01876
Enzymes [BR:
ppy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPE_01876
DNA replication proteins [BR:
ppy03032
]
Prokaryotic type
DNA Topoisomerases
PPE_01876
DNA repair and recombination proteins [BR:
ppy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPE_01876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
MACPF_b-prism
Toprim_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADM69712
LinkDB
All DBs
Position
1996730..1998832
Genome browser
AA seq
700 aa
AA seq
DB search
MADSLVIVESPSKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTADCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EISEFVPEEYWTITAKLAIKDSTFEAKFHKLRGEKKELSSETDVQEVLEAIGKSSYKVRD
VKEKERLRNPSPPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIAASAQEEAKELIIQKYGEAFVPETPRQYSKKAANAQDAHEAIRPTSALRDPETV
KPFMSRDQFRLYKLVWERFMASQMASAIMDTLSVDIEAGETIFRAAGSKVRFPGFMKVYV
EGNDDGKTEEDKLLPPLQPGDKLKKEAVEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFFPTELGELVIEQMEEFFPEILNVEFTANMEGDLDHVEEG
EGNWVKVLSDFYESFEKRLEVAEEEMKEIEIKDEVSDVICDKCGSQMVYKLGRFGKFLAC
SAFPDCRNTKPIVKDIGINCPTCGEGHVVERRSKKGRIFYGCDRYPECDFVSWDKPSIKP
CPSCSSLMVEKRTKQGTKLNCTVCDHSEMLEESDESVETS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcactcgtcatcgtggaatcgccttccaaggcgaagacgatcggcaaatac
ttaggcagcaaatatatcgtcaaggcttccatgggtcatatcagggatttaccgaagagt
cagatcggcgtagaggtcgaaaatgattttaatcccaaatacattaccattcgaggtaaa
ggctcaattctaaaagaattaaaggatgcccgaaaaaaagtaaaaaaagtatatctggcg
gctgacccggatcgcgaaggcgaggctattgcctggcatctggcgcatgcgctggaactg
gacgatacagcagattgccgtgttgtatttaatgaaattacgaagcaggctgtcaaagat
gcttttaaaacacctcgtaaaatcaatatggatttggtcaacgctcagcaggcacgacgg
atactggatcgacttgttggctacaaaatcagcccgttgctctggaaaaaggtaaaaaag
ggtctatccgctgggcgtgtgcagtcggttgcagtgaagattattttggaccgggaaaac
gagatcagtgagtttgtaccggaagaatactggacgattacagctaaactagctattaaa
gacagcacctttgaagcgaaatttcataagctgcgcggtgaaaagaaagagctctccagc
gaaacggatgtacaagaagtgttggaagctatcggaaaatcgtcttacaaggtacgcgat
gttaaagagaaagagcgtttacgcaatccttctcctccattcacaacaagttccttgcaa
caggaggcggctcggaagctcaacttccgtgcatctaaaacgatgtctgtagctcagcag
ctatatgagggtgtggatttaggtaaagaagggaccgtgggtctgattacgtatatgcgt
acggattccacacggatcgccgcttcagctcaagaggaagcgaaagaattaattattcaa
aaatatggcgaagcttttgtgcctgaaactcctcgtcaatattcaaaaaaagcggccaac
gcccaggatgcgcatgaagcgattcgcccaacctctgcgttacgcgatccggaaacagtt
aagccgtttatgagtcgggatcagttccgcttgtacaaattggtatgggaacgttttatg
gccagccagatggcttctgctattatggatactttgtccgtagatattgaagcgggtgag
acgatattccgggcagcaggttctaaggttcgttttccaggtttcatgaaagtgtatgta
gagggaaatgacgacggtaaaaccgaagaagataaactgctgccaccacttcaaccaggc
gataaattaaaaaaagaagcggttgagccgaagcagcattttacacaaccgcctccccgt
tatacggaagcgcgactggtgaagacgctggaagaactgggtataggacgtccaagtacg
tatgcaccaacgctggaaaccattcagaaacgtgggtacgttgctattgaagaaaagaaa
tttttccctacagagctgggcgaattggtcatcgaacaaatggaggagttctttccagag
attctgaatgtggagtttacagctaatatggaaggtgatcttgaccacgtcgaagaaggc
gaaggtaattgggtcaaggtgttgagtgacttttacgagtcattcgagaagcgacttgaa
gtggctgaagaagaaatgaaagaaattgaaataaaagatgaagtatccgatgtcatttgt
gataagtgtggcagccaaatggtatataagcttggccgatttggtaaattcctggcctgt
tctgcttttccagattgccgtaacacaaagccaattgttaaggatatcgggattaattgt
cctacatgcggtgagggccatgtcgtcgaacgacggagtaaaaagggacgtatcttctat
ggatgtgaccgctacccggaatgtgattttgtttcctgggataaaccgtccattaagcct
tgcccaagttgcagtagcctaatggtcgaaaaacgtacaaaacaaggaacgaagctcaac
tgtactgtctgcgatcacagcgaaatgctggaagagagcgatgagagcgtagagacttct
taa
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