Paenibacillus polymyxa E681: PPE_01946
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Entry
PPE_01946 CDS
T01319
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_01946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_01946
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPE_01946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
PEP_mutase
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ADM69782
LinkDB
All DBs
Position
2067583..2069262
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AA seq
559 aa
AA seq
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MSKKTNNDKLMIFALGGVGEIGKNMYVVQYGNDIVVVDSGLKFPEEDMLGIDIVIPDISY
LTENRDKVRGIVLTHGHEDHIGGLPYVLKHLNVPVYGTKLTLGLVENKLKEANLLGETKR
ILINADSEIKLGSTLKATFFRTNHSIPDSVGVCIDTPEGAVVHTGDFKFDHTPVNGQYAD
LQRMAEIGTRGVLALLSDSTNAEKPGFTPSEKSVGIVLEDIFRKSRQRVVVATFASNVHR
IQQVINAAEATGRKVTVIGRSMVNVVGIASDLGYLEIPDGMLIEPEEVGKMSADRVVILC
TGSQGEPMSALTRMARSTHRKVDILPGDSVIIAATPVPGNEKYVGRTIDELFRLGANVYY
SAANPGIHVSGHGSQEELKLMLNLMKPKFFLPIHGEFRMQRRHALLAEGVGIEPENIFIT
DIGEVIEIQNGGARRAGKVTAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
DGTIKSGPDIISRGFVYVRESEGLLDEANRIVSSTLHKLMSENVNEWASLKTNVKDALGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaaaaaaacaaacaacgataaattgatgattttcgctttgggcggcgtcggtgaa
attgggaaaaatatgtatgtcgttcaatacggcaatgacattgtcgtggtggattccggt
ctgaaattcccggaagaggacatgctgggcattgatatcgttattcctgatatttcctac
cttacagagaaccgcgacaaagtaagaggcattgtgctgactcatggtcacgaggaccat
atcggcggtttgccttacgtgttgaaacatttgaatgtaccagtatatggtaccaaattg
acgctgggattggtggaaaataagctgaaggaagcgaatctgcttggtgaaaccaaacgt
attttgatcaatgctgattccgaaatcaagctgggttccacattaaaagcaactttcttc
agaaccaaccatagtattccggattctgtaggtgtatgtattgatactcctgaaggcgct
gttgttcatacaggtgacttcaaatttgaccatactccggtgaacggacaatatgcagat
ttgcagcgtatggctgaaattggcacacgtggcgtactggctcttttgtcagacagtaca
aatgccgagaaaccgggctttacaccttcggaaaagagcgttggtattgtcctggaagac
attttccgcaagtcgagacagcgtgtggtcgtagccacttttgcttctaacgtacatcgt
attcagcaggtaattaatgctgctgaagcaacgggacgtaaagtaacagttattggtcga
agcatggttaatgtcgtaggtattgcttcggacttgggatatttggaaattccagatgga
atgctgattgagcctgaagaagttggcaaaatgtcagcggatcgtgtagttattctctgc
acaggcagtcagggtgaaccgatgtcagctttgacaagaatggctcgttccacacatcga
aaggttgacattcttccaggggattcagtcatcatcgcagctactccggtaccgggtaat
gaaaaatacgttggacgcacaattgatgaactgttccgtctgggtgccaatgtatattac
agcgcagctaatccaggtatccacgtttctggacacggaagccaggaagaactcaagctg
atgctgaatctgatgaaaccaaagttcttcttgccaattcatggtgagttcagaatgcaa
cgtcgtcatgctcttcttgctgaaggcgtaggtattgagcctgaaaatatcttcatcacg
gatatcggtgaagtcattgaaattcagaatggtggagcgcgcagagctggtaaagttaca
gcaggtaacgtactgatcgatggactaggcgtaggagatgtaggaaatatcgtattgcgc
gaccgcaaattgctgtcacaggacggtattttggtggtggttgtgacactgagcaagcaa
gacggaacgattaaatccggaccagatatcatttcccgcggtttcgtatatgttcgtgaa
tcggaaggtttgctggatgaagcgaatcgtattgtctcaagtacactgcataagctcatg
agtgaaaatgtaaatgaatgggcttccctcaagacaaatgtcaaggatgcactaggtcgc
ttcttgtatgagcaaactcgtcgcagaccgatgatcctgccaattataatggaagtgtga
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