Paenibacillus polymyxa E681: PPE_03854
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Entry
PPE_03854 CDS
T01319
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_03854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_03854
03009 Ribosome biogenesis [BR:
ppy03009
]
PPE_03854
Enzymes [BR:
ppy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPE_03854
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPE_03854
Ribosome biogenesis [BR:
ppy03009
]
Prokaryotic type
rRNA helicases
PPE_03854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADM71652
UniProt:
E0RBU4
LinkDB
All DBs
Position
complement(4204772..4206163)
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AA seq
463 aa
AA seq
DB search
MTLNFESLGVEQDLLDKLTEHEITQPSPVQAEAIPEIIKGKHVLARSQTGTGKTLAYLLP
LLQAIDPQKKATQKLILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQIEKLKD
HPQLVVGTPGRVRELIASKKLKMHNITAIVIDEVDQMFQLGGAGDVTNILGTAQRDRQLV
FLSATLNDEIQSLAKREMRDYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRRLVRHFN
PRKALVFVNTTNAIGEIEAKLKHMGLTTASLYGDADKVTRSNVLARFREDKLKVLVASDV
AARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGRMGRKGLVASVVTDRETFIMRKFSREL
GIDIAERALHGGRVVVPRPADAKRAPVRPSEARSISDGAQTENRKAPVRTENGRPGRNSA
NGSAPGKSKGAALSKAGKAQRERDRKNKGAPRWLKEKGSKPNE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgacattgaattttgaatcgctcggcgttgaacaagatctgttggacaaactgactgag
catgaaattacacagccttcgccagtgcaggcagaggctataccggaaataatcaaggga
aagcatgttttggcgcgttcacaaactggcacaggcaagacactggcttatttattgccg
ctgttgcaagcgattgatccacagaaaaaggctacgcaaaagctgatactagctccaagc
caggaactagccatgcaaattgtacgtgagggtcagcgctacggagagcatcgcggaatc
cgtgtactcggtctgattggtggggcggctatcaaacgtcaaatcgaaaagctcaaggac
catccacaacttgtcgtgggtacaccaggacgtgtacgggaactcatcgcttcgaaaaag
ttgaaaatgcacaatattacagccattgttattgatgaggtggatcagatgttccagctc
ggcggagcaggcgatgtaaccaacatattgggcaccgcccaacgtgatcgtcaattggta
ttcctgtccgcaacgctgaacgatgagatccagtcgctggcgaaacgggagatgcgtgac
tacgtagaaattgggattgatcccgaccagaagacagccagtggattggaacactattac
tttgtatctgaagaacgggataaagtggatatgctgcgccgtctggtacgtcattttaat
ccaagaaaagcgctggtgttcgtgaatacaaccaatgccatcggggagattgaagccaag
ctcaagcatatggggctgactacggcgtccttgtatggagatgcggataaggtcacgcgt
agcaacgtattggcccgattccgcgaggacaagctcaaagtgctggtcgcttcggatgtg
gcagcccgtggtctggatattgagggccttgaaatggtcattcattttgacccggctacg
gatagtcaagcttatgttcaccgtgcaggacggacaggacggatgggacgcaaaggattg
gtggcgtcggttgtcaccgaccgtgaaacgttcatcatgcgtaagttctcccgtgaactg
ggcattgacatcgcagagcgtgcgttgcacggaggtcgagtagttgtgccgcgtccggcg
gatgccaagcgtgcacctgtaagaccatccgaggccagatctatatctgacggagcacag
acggaaaaccgtaaggcacctgttcgtaccgaaaacggacgtcctggcaggaattccgcg
aacggttcagctccaggcaagagcaaaggagcagccttgtccaaagcaggaaaagcacag
cgcgagcgtgatcgcaaaaacaagggtgcgccaagatggctgaaggaaaaaggatcaaaa
ccgaacgagtaa
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