Paenibacillus polymyxa E681: PPE_04286
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Entry
PPE_04286 CDS
T01319
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPE_04286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppy03021
]
PPE_04286
03400 DNA repair and recombination proteins [BR:
ppy03400
]
PPE_04286
Enzymes [BR:
ppy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PPE_04286
Transcription machinery [BR:
ppy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPE_04286
DNA repair and recombination proteins [BR:
ppy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPE_04286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADM72050
LinkDB
All DBs
Position
complement(4661861..4665475)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNQPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSAEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEEGSNMILRNMNEAISAYQRGTAGLHARVAIP
VKALNKTSFTEKQQEAMLITTVGKIIFNEIFPASFPYINDATRANLLYGTAEEFFVYEKG
VNLTEAIQNAPQANGVGKDYLGNIIARCFETYHTTETAVILDKIKQLGFTYSTRAGVTVA
VSDVIVPVEKQEILKGSEDKAQVVTNQYRRGLITNEERYDRIIDIWSKAKDDITEVLMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRLEGRYCFETVRHPETGEILARRNELIDSDKAEAIVKAGVHKVQIRSVLSCRAKHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGTVKEVREGKDRREIDIQGEAETKTYSVTYGSRLRVSEGMTVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
IDAGDTILLPGSFVDVHEYENANKIAILSGQEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFAQPEEGQSPSEELEP
ISAE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaatttcgaatatatgaaaatcgggcttgcttcccccgaaaagatt
cgttcttggtcccgcggagaagtcaaaaaaccggagacgattaactatcgtacgcttaaa
ccggaaaaagaaggactattttgcgagaaaattttcggacctacgaaagactgggaatgt
cattgcggtaagtacaaacgtgtacgctataaaggtgttgtctgtgaccgttgtggagta
gaagttactcgcgctaaggttcgccgtgagcgtatgggccatattgagttggctgctcct
gtatcgcacatttggtactttaaaggcattccaagtcgtatgggtcttgctcttgatatg
tctccaagatctctggaagagatcatttacttcgcatcttatgttgtaaccgatccagga
gatacgcctttggagaaaaagcaactcctgtccgagaaagaataccgtagctatcgtgaa
aaatatggttatggcttccaggcaggtatgggtgctgaagcggttaaaaagcttcttcaa
gatttggatatagacaaagagttggaattcttgaaagaagagctgcgtacagctcaagga
caacgtcgtaaccgtgcaatcaaacgccttgaagttattgaggcattccgtaactccggc
aaccaaccggattggatgatcatggacgtacttcctgtaattcctcctgagcttcgtcca
atggtacagttggatggtggtcgtttcgctacttctgaccttaacgacttgtatcgtcgt
gttattaaccgtaataaccgtctgaaacgtctgttagatttaggtgcgccagatattatc
gtacaaaatgaaaaacggatgttgcaggaagctgttgacgccttaattgataatggtcgt
cgtggtcgtcctgttacaggtccaggtaaccgtcctttgaaatccctcagccacatgctg
aaaggtaaacaaggacgtttccgtcagaacttgctcggaaaacgtgttgactactctggt
cgttccgttatcgttgtaggtccgtacttgaaaatgtatcaatgcggtttgccgaaagaa
atggcacttgaactgttcaaaccttttgttatgaaagaactggtgaacaaaggtttggcg
cacaatatcaagagcgcgaagcgtaaagtagaacgtgtgagtgcagaagtatgggatgtg
ctggaagaagtaatcaaggagcatccagttcttctgaaccgtgcccctacgttgcataga
ctcggtatccaggcgttcgaaccgattttggttgaaggtcgtgcgattcgtctgcatccg
ctcgtatgtactgcatataatgccgactttgacggtgaccaaatggctgttcacgttccg
ttgtctgctgaagctcaagctgaagctcgtttgcttatgctggcatccggcaacatcttg
aatccgaaagacggcaagccagttgttacaccttcccaggatatggttcttggttctttc
tatctgactatggataacaaagaagaagaaggaagcaatatgatccttcgcaacatgaat
gaagctatatcggcttatcaacgtggtacagctggtcttcatgctcgtgtagctattccg
gttaaagctttgaataaaacgagctttacggaaaaacaacaggaagcgatgttgatcaca
acggttggtaaaattatctttaatgaaattttcccggcaagcttcccgtacatcaatgat
gctacccgtgcgaacctgctttatggtactgcggaggagttctttgtttacgagaagggt
gtaaatcttacagaagccattcaaaacgctccgcaagctaacggggtaggcaaggattac
cttggtaatatcattgcccgttgttttgagacttaccatacaacagaaacagctgtaatt
ctggataaaattaagcagcttggctttacgtattctactcgtgcaggggtaaccgttgca
gtatcggacgtaatcgtgccggtggaaaaacaagagattcttaaggggtccgaagataaa
gcgcaagttgtgacgaatcagtatcgtcgtggtctgattacgaatgaagaacgctatgac
cggattatcgacatttggtctaaagcgaaagatgatattaccgaagtattgatgaagtcc
atggatcgctataactccatcatgatgatggtggactccaaagcgcggggtaacaaatca
cagattactcagctcggcggtatgcgtggtctgatggccaatccatccggacgtattatc
gaactcccaatcaaatcaaatttccgtgaaggtctgacagtactcgagtacttcatctcc
actcacggagcgcgtaaaggtttggcggatacagcccttcgtacagctgactccggttat
ctgactcgtcgtctcgtagatgtggcacaggatgttatcgtgcgtgaagaagactgcgga
acggataaaggcttcacagtaagccgtatccaggacggtaaagaagtaattgaggatctc
tatgaccgtctggaaggtcgctattgctttgaaacggtacgtcatcctgagactggtgag
attttggctagacgtaacgaactgattgactcggacaaagctgaagcgattgttaaagct
ggtgttcacaaagttcaaatacgttctgtattaagttgccgtgctaaacatggcgtctgc
aagaaatgctacggtcgtaatctggctactggtaaacacgttgagattggtgaagcagtt
ggtatcatcgctgcacaatccatcggtgagccaggaacacagcttactatgcgtacgttc
cacacaggcggcgtagcgggtgatgatattacacaaggtttgcctcgtatccaggagctt
tttgaagcgcgtaatcctaaaggtcaggcaacgattagtgaaattgacggtacagttaaa
gaagttcgtgaaggtaaagaccgccgtgagatcgacattcagggtgaagctgaaacgaaa
acatactcagtaacgtatggttcccgcctgcgcgtaagcgaaggtatgactgttgaagct
ggggacgaactgacggatggttcgattgatcctaaagaaatgctgcgtattaaaggtatt
cgcggggtacagaactatatccttcaggaagttcaacgcgtataccggaaccagggcgta
gaaatcaacgacaagcacgtagaagttatgattcgtcaaatgttgcgtaaaatccgtatc
attgatgcgggcgacacgatcttacttccaggctcctttgttgatgtccatgagtatgaa
aatgcaaacaagatagcgattctcagcggccaagaaccagcggtagccaagccggtactg
ctcggtattaccaaggcatctctggaaactgactccttcttgtcagcagcatccttccag
gaaactactcgtgtcctgactgatgcagctattaaaggcaaggtcgatcagttgcttgga
ctgaaagagaacgtaattattggtaaattgattcctgcgggaacaggtatgaaccgttac
cgtagcgtgaaatttgcccaaccggaagaggggcagtctccatctgaggagctcgaacca
atttcggctgagtaa
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integrated database retrieval system
