Paenibacillus polymyxa E681: PPE_04510
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Entry
PPE_04510 CDS
T01319
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_04510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_04510
03009 Ribosome biogenesis [BR:
ppy03009
]
PPE_04510
Enzymes [BR:
ppy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPE_04510
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPE_04510
Ribosome biogenesis [BR:
ppy03009
]
Prokaryotic type
rRNA helicases
PPE_04510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADM72270
LinkDB
All DBs
Position
complement(4936400..4938049)
Genome browser
AA seq
549 aa
AA seq
DB search
MKNFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPI
LQKLNLDKRHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLKG
GAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQTM
LFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDMLNTD
RPYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATD
VAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRV
AGVTFTSSEGGGQRRPASDTADRQGRERRSGRNDRRSSGGNDSGGGRRGGGREQAGRRDA
TSGERRSSRGSSDRGGYDRSSSGSARGGQGRSAGQSSERSGYDRSSGGSARGGQGRSAGQ
SSERGGYDRSSGGSARGGQGRSAGQSSERGGYDRSSGGSARGGQGGRGGQAKGGPRGGQG
QGGRRGRSR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaattttgcagcattaggcgtagagcagcattgggtagaagccttgaaagaacag
ggaatttcatccccaactcctgtacagcaggagtcgattccactgttgatggaaggtcag
gatgttatcgccgaggcacatacgggaacagggaagacgcttgcgtttttactgccgatt
ctacaaaagctgaatttggataagcgacacccgcaggcgctcgtgattgcacctacgcgt
gaattggcgctccaaattacagaggaagccaacagattggctgcgacggagccaagtttg
tctttactggctgtttatggaggacaggacgtagagcgtcagcttcgtaaactgaaaggc
ggcgcacaactgattattggaacacctgggcgactgctggatcacctgagacgtggcacg
ctggatctgggaggcattaaaatgctggtcctggacgaagccgaccaaatgttacacatg
ggctttttgaacgatgtggagacgattcttcaggaggttccttaccggagacagacgatg
ctgttttccgctacgatgccagccggtattcgcaagctggctcgtgtatatatgaacgaa
cccgtagatgtcaaagtgaaatccgcttcgtccgttccggtgagccaaatccgtcaggtc
gttgtgcaaacaacagaccgtggtaagcaacaggcattggtggatatgctgaatacggat
cgtccgtacttggctgttattttctgccgtacgaagcgccgggctgccaaactgaacgaa
gagctgcaagagatgggctttgagagcggtgagctccacggagatttgtcccagaacaag
cgggagcaagtgatgaaggcgttccgtgaagcgaaactccaattgctcgtagcgactgat
gtagctgcgcgcggcctggatgtagaaggcgtcacgcatgtctttaactatgacatgccg
caggatgccgaaagctacatccaccgcatcgggcgtaccggccgtgccggaggcaaaggc
gtggcggtgacgctcgctacgccaagggatgttccagagcttcggaacatccaaagagtt
gctggtgtcacattcaccagcagtgagggcggcggacagcgtagacctgcttccgatacg
gctgatcgacagggtcgagaacgccgttcgggcagaaacgaccgccgttcctccggcggc
aacgactccggcggtggacgccgggggggcggccgcgaacaggcgggccgtcgtgatgcc
acaagcggcgaacgtcgctctagccgtggcagtagcgatcgcggcggatatgaccgcagc
agcagtggttccgcacgcggaggccaaggccgctcggcagggcaaagcagcgagcgtagc
ggatatgaccgcagtagcggcggttccgcacgcggaggccaaggtcgttcggcagggcaa
agcagcgagcgcggtggatatgaccgcagcagcggtggttccgcacgcggaggtcagggc
cgctcggcagggcaaagcagcgagcgcggtggatatgaccgcagcagcggcggttcggcg
cgcggaggccaaggtggtcgcggtggacaagccaaaggcggcccgcgtggtggtcaagga
caaggaggccgtcgcggacggtccagatag
DBGET
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