Pongo pygmaeus (Bornean orangutan): 129006116
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Entry
129006116 CDS
T10128
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129006116 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129006116 (EXOSC1)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129006116 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
129006116 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Nairovirus_NSm
Motif
Other DBs
NCBI-GeneID:
129006116
NCBI-ProteinID:
XP_054291431
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Position
8:complement(102740845..102754007)
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AA seq
195 aa
AA seq
DB search
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
SFRPGDIVLAKVISLGDTQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
EFRKVARVQPEFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacccgtgagatactgcatccccggcgaacgtctgtgtaacttggaggagggc
agcccaggcagcggcacctacacccgccacggctacatcttttcgtcgcttgccggctgt
ctgatgaagagcagcgagaatggcgcgcttccagtggtgtctgtagtgagagaaacagag
tcccagttactgccagatgtgggagctattgtaacctgtaaggtctctagcatcaattca
cgctttgccaaagtacacatcctgtatgtggggtccatgccacttaagaactcttttcga
ggaactatccgcaaggaagatgtccgagcaactgaaaaagacaaggttgaaatttataag
agtttccgcccaggtgacattgtcttggccaaagtgatctccttaggtgacacacagtcc
aactacctgctaaccactgccgagaatgagctgggagtggtggtagcccacagtgagtca
ggtatccagatggttcccatcagctggtgtgagatgcagtgccctaagacccacactaaa
gaattccggaaagtagcccgagtacaacccgaattcttgcagacctaa
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