Pongo pygmaeus (Bornean orangutan): 129006170
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Entry
129006170 CDS
T10128
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04820
Cytoskeleton in muscle cells
ppyg05169
Epstein-Barr virus infection
ppyg05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129006170 (VIM)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
129006170 (VIM)
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
129006170 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129006170 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ppyg04812
]
129006170 (VIM)
04147 Exosome [BR:
ppyg04147
]
129006170 (VIM)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
129006170 (VIM)
Cytoskeleton proteins [BR:
ppyg04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
129006170 (VIM)
Exosome [BR:
ppyg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129006170 (VIM)
Exosomal proteins of other cancer cells
129006170 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
DUF7491
GeBP-like_DBD
TPR_MLP1_2
RBD-FIP
DUF4515
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
129006170
NCBI-ProteinID:
XP_054291549
LinkDB
All DBs
Position
8:17353978..17363628
Genome browser
AA seq
466 aa
AA seq
DB search
MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGV
YATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE
DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE
EIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS
LNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcacc
gcgagccggccgagttccagccggagctacgtgactacgtccacccgcacctacagcctg
ggcagcgcgctgcgccccagcactagccgcagcctctacgcctcgtccccgggcggcgtg
tatgccacgcgctcctctgccgtgcgcctgcggagcagcgtgcccggggtgcggctcctg
caggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacactcgc
accaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaag
gtgcgcttcctggagcagcagaataagatcctgctggccgagctcgagcagctcaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcag
gtggaccagctaaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctggccgag
gacatcatgcgcctccgggagaaattgcaggaggagatgcttcagagagaggaagccgag
aacaccctgcaatctttcagacaggatgttgacaacgcatctctggcacgtcttgacctt
gaacgcaaagtggaatctttgcaagaagagattgcctttttgaagaaactccacgaagag
gaaatccaggagctgcaggctcagattcaggaacagcatgtccaaattgatgtggatgtt
tccaagcctgacctcacggctgccctgcgtgacgttcgtcagcaatatgaaagcgtggct
gccaagaacctgcaggaggcagaagaatggtacaagtccaagtttgccgacctctctgag
gctgccaaccggaacaatgacgccctgcgccaggcaaagcaggagtccactgagtaccgg
agacaggtgcagtccctcacctgtgaagtggacgcccttaaaggaaccaatgagtccctg
gaacgccagatgcgtgaaatggaagagaactttgccgttgaagctgctaactaccaagac
actattggccgcctgcaggatgagattcagaatatgaaggaggaaatggctcgtcacctt
cgcgaataccaagacctgcttaatgttaagatggcccttgacattgagattgccacctac
aggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctcc
ctgaacctgagggaaactaatctggattcactccctctggttgacacccactcaaaaagg
acacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcag
catcacgatgaccttgaataa
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