Pongo pygmaeus (Bornean orangutan): 129006362
Help
Entry
129006362 CDS
T10128
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04382
Cornified envelope formation
ppyg04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
129006362 (COL17A1)
09158 Development and regeneration
04382 Cornified envelope formation
129006362 (COL17A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
129006362
NCBI-ProteinID:
XP_054291911
LinkDB
All DBs
Position
8:complement(109335824..109392863)
Genome browser
AA seq
1498 aa
AA seq
DB search
MDVTKKNKRDGTEFTERIVTETVTTRLTSLPPKGGTSNGYAKTGSLGGGSRLEKQSLTHG
SSGYINSTGSTRGHASTSSYRRAHSPASTLPNSPGSTFERKTHVTRHAYEGSSSGNSSPE
YPRKEFASSSTRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASVSPTRNSS
NTLPIPKKGTVETKIVTASSQSVSGTYDATILDANLPSHVWSSTLPAGSSMGTYHNNMTT
QSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSVFGMQNNLAPSSTTLSHGTTT
TSTAYGVKKNMPQSPAAVNTGVSTSAACTTSVQSDDLLHKDCKFLILEKDNTPAKKEMEL
LIMTKDSGKVFTASPASIAATSFSEDTLKKEKQAAYNADSGLKAEANGDLKTVSTKGKTT
TADIHSYGSGGGGGGSGGGGGVGGAGGGPWGAVPAWCPCGSCCSWWKWLLGLLLTWLLLL
GLLFGLIALAEEVRKLKARVDELERIRRSMLPYGDSMDRIEKNRLQGMAPAAGADLDKIG
LHSDSQEELWMFVRKKLMMEQENGNLRGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHP
GPEGPKGQKGSMGDPGMEGPMGQRGREGPMGPRGEPGPPGSGEKGERGAAGEPGPHGPPG
VPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRG
LTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLMGMPGIRGPPGPSGDPGKPG
LTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPG
PAGPAGLPGQQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLPN
SETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQ
GPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSGQEIQQYIS
EYMQSDSIRSYLSGVQGPPGPPGPPGPVTTITGETFDYSELASHVVSYLRTSGYGVSLFS
SSISSEDILAVLQRDDVRQYLRQYLMGPRGPPGPPGASGDGSLLSLDYAELSSRILSYMS
SSGISIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGNVWSSISVE
DLSSYLHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDV
RSFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAG
SLGTGGAFGAAAGDGGPYGTDIGPGGGYGAAAEGGMYGGNGGLLGADFAGGLDYNELAVR
VSESMQRQGLLQGMAYTVQGPPGRPGPQGPPGISKVFSAYSNVTADLMDFFRTYGAIQGP
PGQKGEMGAPGPKGDRGPAGPPGHPGPPGPRGHKGEKGDKGDQVYAGRRRRRSIAVKP
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atggatgtaaccaagaaaaacaaacgagatggaactgaattcactgaaagaattgtcact
gaaacagtaaccacaagacttacatccttaccaccaaaaggcgggaccagcaatggctat
gctaaaacaggctctcttggtggagggagccggctggagaaacaaagcctgactcatggc
agcagcggctacataaactcaactggaagcacacgaggccatgcctccacctctagttac
aggagagctcactcacctgcctccactctgcccaactccccaggctcaacctttgaaagg
aaaactcacgttacccgccatgcgtatgaagggagctccagtggcaactcttctccggag
taccctcggaaggaatttgcatcttcttcaaccagaggacggagtcaaacacgagagagc
gaaattcgagttcgactgcagagtgcgtccccatccacccgatggacagaattggatgat
gttaagcgtttgctcaaggggagtcgatccgcaagtgtgagccccacccggaattcctcc
aacacactccccatccccaagaaaggcactgtggagaccaaaattgtgacagcgagctcc
cagtcggtgtcaggcacctacgatgcaactatcctggatgctaaccttccgtcccatgtg
tggtcctccaccctgcccgcagggtcctccatggggacctatcacaacaacatgacaacc
cagagctcgtccctcctcaacaccaatgcctactctgcgggatcagtcttcggagttcca
aataacatggcgtcctgctcacccactttgcaccctggactcagcacttcctcctcagta
tttggcatgcagaacaatctggcccccagctcgactaccctgtcccatggcaccaccact
acttccacagcatatggggtgaagaaaaacatgccccagagtcctgcggctgtgaacact
ggcgtttccacctctgccgcctgcaccacaagtgtgcagagcgatgaccttttgcacaag
gactgcaagttcctgatcctagagaaagacaacacacctgccaagaaggagatggagctg
ctcatcatgaccaaggacagcgggaaggtctttacggcctcccccgccagcatcgctgca
acttctttttcagaagacaccctaaaaaaagaaaagcaagctgcctacaatgctgactca
ggcctaaaagccgaagctaatggagacctgaagactgtgtccacaaagggcaagaccacc
actgcagacatccacagctacggcagcggtggtggtggtggtggcagtggaggaggtggc
ggtgttggtggcgctggaggcggcccttggggagcagtgccagcctggtgcccctgcggc
tcctgctgcagctggtggaagtggctgctgggcctgctgctcacctggctgctactcctg
gggctgctcttcggcctcattgctctggcggaggaggtgaggaagctgaaggctcgtgtg
gatgagctggagaggatcaggaggagcatgctgccctatggagacagcatggatagaatc
gaaaagaaccgcctccagggcatggcacccgcggcgggagcagacctggacaaaattggg
ctgcacagcgacagccaggaggagctctggatgttcgtgaggaagaagctaatgatggaa
caggaaaatggaaatctccgaggaagccctggccctaaaggtgacatgggaagtccaggc
cctaaaggagatcgagggttccctgggactccaggtatccctgggcccttgggccaccca
ggtccagaaggaccaaagggtcaaaaaggcagcatgggagatcctggcatggaaggcccc
atgggccagagagggcgagaaggccccatgggacctcgtggtgagccagggcctcctgga
tctggagagaaaggggaaagaggggctgctggtgaaccaggtcctcatggcccacctggt
gttccaggttctgtgggtcccaaaggttccagcggctctcctggcccacagggccctcca
ggtcctgtaggtctccaagggctccgaggtgaagtgggacttcctggtgtcaaaggtgac
aaaggaccaatgggaccaccaggacccaaaggtgaccagggtgagaaaggacctcgaggc
ctcacaggcgagcctggcatgagaggtttgcctggtgctgttggtgagcctggggctaaa
ggagcaatgggtcctgctggcccagacggacaccaaggcccaagaggtgaacaaggtctt
atggggatgcctggaatccgtggcccaccaggaccttctggagacccaggaaagccaggt
ctcacaggaccccagggacctcagggacttcccggtacccctggccgaccaggaataaaa
ggtgaaccaggagctccaggcaagatcgtgacttcggaggggtcatcaatgctcactgtc
ccaggccccccaggacctcctggagccatgggacccccaggacctccaggtgccccaggc
cctgccggcccagctggtctcccaggacagcaagaagttcttaatttacaaggtccccca
ggcccacccggcccacgcgggccaccagggccttccattccaggcccaccaggaccccga
ggcccaccaggggagggtttgccaggcccaccaggcccaccaggatcgttcctgcccaac
tcagaaaccttcctctctggccccccaggcccacccggccccccaggtcccaagggagac
caaggtcccccaggccccagaggacaccaaggcgagcaaggactcccaggtttctcaacc
tcagggtccagttctttcggactcaaccttcagggaccaccaggcccacctggcccccag
ggacccaaaggtgacaaaggtgatccaggtgttccaggggctcttggcattcctagtggt
ccttctgaagggggatcatcaagtactatgtacgtgtcaggcccaccaggaccccctggg
ccccctgggcctccgggctctatcagcagctccggccaggagattcagcagtacatctct
gagtacatgcagagtgacagtattagatcttacctatccggagttcagggtcccccaggc
ccacctggtcccccaggacctgtcaccaccatcacaggcgagactttcgactactcagag
ctggcaagccacgttgtgagctacttacggacttcggggtacggcgtcagcttgttctca
tcctccatctcttctgaagacatcctggctgtgctgcagcgggatgacgtgcgtcagtac
ctgcgtcagtacctgatgggccctcggggtccgccagggccaccaggagccagtggagat
gggtccctcctgtctttggactatgcagagctgagtagtcgcattctcagctacatgtcg
agttctgggatcagcattgggcttcctggtcccccggggccccctggcttgccgggaacc
tcctatgaggagctcctctccttgctgcgagggtctgaattcagaggcatcgttggaccc
ccaggtcccccgggtccaccagggatcccaggcaatgtgtggtccagcatcagcgtggag
gacctctcgtcttacttacatactgccggcttgtcattcatcccaggccctccaggacct
cctggtcccccagggcctcgagggcccccgggtgtctcaggagccctggcaacctatgca
gctgaaaacagcgacagcttccggagcgagctgatcagctacctcacaagtcctgatgtg
cgcagcttcattgttggccccccaggccctcctgggccgcagggaccccctggggacagc
cgcctcctgtccacggatgcctcccacagtcggggtagcagctcctcctcacacagctca
tctgtcaggcggggcagctcctacagctcttccatgagcacaggaggaggtggtgcaggc
tccctgggtacagggggtgcctttggtgcagctgcaggagatgggggcccctatggcact
gacatcggcccaggcggaggctatggggcggcagcagaaggcggcatgtatggtggcaat
ggcggactattaggggctgactttgctggaggtctggattacaatgagctggctgtgagg
gtgtcagagagcatgcagcgtcagggcctactgcaagggatggcctacactgtccagggc
ccaccaggccggcctgggccgcaggggccacccggcatcagcaaggtcttctctgcctac
agcaacgtgactgcggacctcatggacttcttccgaacttatggagccattcaaggaccc
cctgggcaaaaaggagagatgggcgctccaggacccaaaggtgacaggggccctgctggg
ccaccaggtcatcctgggccacctggccctcgagggcacaagggagaaaaaggagacaaa
ggtgaccaagtctatgctgggcggagaaggagaagaagtattgctgtcaagccgtga
DBGET
integrated database retrieval system
