Pongo pygmaeus (Bornean orangutan): 129007529
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Entry
129007529 CDS
T10128
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppyg03009
]
129007529 (IGHMBP2)
03012 Translation factors [BR:
ppyg03012
]
129007529 (IGHMBP2)
Enzymes [BR:
ppyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129007529 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
129007529 (IGHMBP2)
Ribosome biogenesis [BR:
ppyg03009
]
Eukaryotic type
Other ribosome biogenesis factors
129007529 (IGHMBP2)
Translation factors [BR:
ppyg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129007529 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
ResIII
DEAD
nSTAND3
AAA_16
Helicase_RecD
SLFN-g3_helicase
AAA_22
UvrD-helicase
IstB_IS21
AAA_25
PhoH
DnaB_C
Flavi_DEAD
Ada3
ABC_tran
AAA
Zot
NPHP3_N
NTPase_1
DAP3
UvrD_C_2
ATPase
AAA_31
Motif
Other DBs
NCBI-GeneID:
129007529
NCBI-ProteinID:
XP_054294554
LinkDB
All DBs
Position
9:complement(5977505..6014182)
Genome browser
AA seq
997 aa
AA seq
DB search
MASAAVESFVTKQLDLLELERDAEVEERRSWQENISPKELQSRGVCLLKLQVSSQRTGLY
GRLLVTFEPRRCGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTPKSVTVAFDE
SHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPAS
EIHPLTFFNTCLDTSQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLC
CAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDI
DQVFVKNKKTQGKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGP
LKLLPESHFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSL
SLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHPSVAGHLLRDLPGVAA
TEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSP
YNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVA
VTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDDIVPENYSHESSQGFS
HAATKPQGPAMSTRTGSQRQEGGQEAAAPARQGRKKPAGKSLASEAPSQPSLNRGSPEGV
ESQDGVDHFRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFI
TVSKRAPPAPQPPAAPGPPAGTGGPAPLPPVPPNPAQTEQPPREQRGPERPDLRTLHLER
LQRVRSAQGQPASKEQQASGQQKLPEKKKKKEAKGHPAIDLPTEEDFEALVSAAIKADNT
CGFAKCTASVTTLGQFCQLCSRRYCLSHHLPEIHGCGERARAHARQRISREGVLYAGSGT
KDRSLDPAKRAQLQRRLDKKLSELSNQRTSRRKERGT
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggctgtggagagcttcgtgaccaagcagctggacctgctggagctcgag
agagacgcggaggtggaggagcgcaggtcctggcaggagaacatctctccgaaagagctc
cagagccgaggcgtgtgtttgctgaagctgcaggtatccagccagcgcactgggctgtac
ggacggctgctggtcacctttgagcccaggcgatgcgggtccgcagcagctcttcccagt
aacagctttacttctggtgatatcgtgggcctgtacgatgctgctaatgagggcagtcag
ctggccactgggatcctgacccgggtcaccccgaaatcggtcacggtggcctttgatgag
tcccacgatttccagttgagcttggaccgagagaattcctacagactgttaaaacttgcc
aatgatgtcacttacaggcgactgaaaaaagccctgattgctctaaagaagtatcattct
ggcccagcctcctcactcatagaagtgctctttggcagatctgctcccagtcctgccagt
gaaatacacccgctgacattcttcaacacctgcctggacacctcccagaaagaagcggtt
tcatttgcgctgtcgcagaaagaacttgccatcatccatggacctcctggcactgggaaa
accacgactgtggttgagataattcttcaagctgtgaaacaaggcttaaaggttctgtgc
tgcgccccctccaacatcgctgtggacaatctggtggagcgcctggctctgtgtaagcag
cggattctgcgcctggggcaccccgcccgcctcctggagtccattcagcagcactccctg
gatgcggttttagcgcggagtgacagcgcccagattgttgcagatatcaggaaggacatc
gaccaggtctttgtgaaaaacaaaaagacccagggtaagagagagaaaagtaattttcga
aatgaaattaagctgttaagaaaagaactgaaggagagggaagaagcagctatgctcgag
agcctcacttcggcaaacgtggtccttgcaacaaacacaggtgcgtctgccgatggcccg
ctgaagttgctgcccgagagccacttcgacgtggtggtcattgacgagtgtgcccaggcc
ctcgaggcgagctgctggatccccctgttgaaggcgagaaagtgcatcctggcgggcgat
cacaagcagctgccccccaccacagtctctcacaaggctgcgctggcagggctgtcactc
agcctgatggaacgcctggccgaggagtacggcgcgagggtggtgcggacactgacggtg
cagtaccgcatgcaccaggctatcatgcgctgggcctcagacaccatgtacctcgggcag
ctcacggcccacccttccgtggcggggcacctcctgagggacctcccaggtgtggctgcc
acagaagagacgggtgtgcctctgctcctggtggacaccgctggctgcgggctgtttgag
ctggaggaggaggacgaacagtcgaaagggaaccctggcgaagtccgcctcgtcagtttg
cacatccaggctctggtagacgctggtgttccagcccgtgacattgccgtggtctcacca
tacaacctccaggtggacctgctcagacagagcctcgtgcacaggcaccccgagcttgaa
atcaagtccgtcgatggcttccaaggccgagagaaggaggccgtgatactgtccttcgtc
aggtccaacaggaaaggtgaagttggttttcttgctgaggaccggaggatcaacgtggct
gtcacccgcgcccggcgccacgtggcggtcatctgtgactcccgtactgtcaacaaccat
gcatttttgaagaccctggtggagtatttcacacagcatggggaagtacgcacggccttt
gaatatcttgacgatattgtcccagaaaactattcccatgagagctcccagggtttcagc
cacgctgccaccaagccccagggccctgctatgtccaccaggaccggaagccagcggcag
gagggaggccaggaggccgcagcacctgccagacagggccggaagaagccggccgggaag
tctctggcctctgaagccccatctcagcccagcctcaacagaggcagcccggagggagtg
gagagccaagacggcgtggaccacttccgtgccatgatagtggagttcatggccagcaag
aagatgcagttggagtttcctccttccctcaattcccacgacaggctgcgggtccaccaa
atagccgaggagcacgggctgaggcacgacagttccggggaagggaagaggaggttcatc
accgtgagcaagagggccccgccggccccgcaacccccagcagccccgggacccccagca
gggaccggtggcccagcccctctcccgccagtgccccctaaccctgcgcagacggagcag
cctcccagggagcagcgtggcccggagcggcctgatctgaggacgctgcacctggagaga
ctgcagagggtcaggagcgcgcaggggcagcccgccagcaaggagcagcaggcctcaggg
cagcagaaacttccagaaaagaaaaagaaaaaagaagccaaaggacatccggccatagat
ctgcccacggaggaggactttgaggccctggtttctgctgccattaaggctgataacacc
tgtggctttgccaagtgcacagccagcgtcacgaccctgggccagttctgccagctctgc
agccgccgctactgcctcagccaccacctgcccgagatccatggctgcggtgagagggct
cgcgcccatgcccggcagagaatcagccgggaaggggtcctctatgccggcagcgggacc
aaagacagatccctggacccagccaagagggcccagctgcagaggaggctggataagaag
ctgagcgagctcagcaaccagaggaccagccggaggaaggagagggggacgtga
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