Pongo pygmaeus (Bornean orangutan): 129009004
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Entry
129009004 CDS
T10128
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129009004 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppyg03021
]
129009004 (PCF11)
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129009004 (PCF11)
Transcription machinery [BR:
ppyg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129009004 (PCF11)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129009004 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
129009004
NCBI-ProteinID:
XP_054297621
LinkDB
All DBs
Position
9:84217940..84247290
Genome browser
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN
RISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQS
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK
EKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSARKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSRE
DRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSG
WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMI
FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPAVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQ
PGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSF
NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHY
FDEKNLQSSQFGNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVAAQPPPEEEEDQ
NEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESVATPSEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaagccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatt
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaagttacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacgtctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaggagccttcaacacctggtacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacacaa
gaacaactaataaggcaacagttactggcaaagcaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggaaacatccaatttaggtcctggatctgcaccatccaaattacatgtttcacag
attccccctatggcagttaaagctcctcatcaggttcctgtgcaatctgagaaaagccgt
ccaggaccatccttacaaattcaggatttgaaaggaactaaccgggatcctcgtctgaac
aggataagccaacattctcatggaaaagatcaaagtcacaggaaagaatttctaatgaac
acattaaaccagtctgatactaagacaagtaaaactataccctctgaaaaactaaattca
tctaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaatca
gattcaaaatcgaaatcgaaatcgaaatcaccatcacctttgaaaaacaaattatctcac
acaaaagacttgaaaaatcaagaatcggaaagtatgaggttgtctgatatgaacaagaga
gatccaagattaaaaaaacatcttcaggataagaccgatggcaaagatgatgatgtgaaa
gagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaagtcatccgaacac
agactggctggaagtagaaataaaatcataaatggcattgtacaaaagcaggatacaata
acagaagagtcagaaaaacaggggacaaaaccagggagatcgagtgctagaaagcgatca
agatctcgatcacccaagtctaggtcaccaattatacattccccaaagagaagagatagg
cggtcacccaaacgaaggcaaagaagtatgtctccaacatcgacacctaaagctggaaag
attcgccaatctggagctaagcagtcacatatggaagagtttacaccaccttctagggaa
gacagaaatgctaagagaagtactaaacaggatattcgggatccaaggcgaatgaaaaag
actgaagaggagcgaccacaagaaactacaaatcagcattctacaaagtcaggcacggaa
ccaaaggagaatgtagaaaactggcaaagttccaagtctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacaggttgatgaacatagtaaacctcctcatctgagg
catagggagagctggtcaagcactaaaggaattttatcacctcgagccccaaagcagcaa
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gacttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtgcgagaagagcagagatctccattcaatgat
cgttttccacttaagcgacctcgatacgaagattcagataaaccatttgtagatagccca
gcatcaagattcgccggcctggatacaaatcagcgacttacagctttagctgaagacaga
ccgttatttgatggacctagtaggccatcagtagcaagagatggcccaacgaagatgatt
tttgaaggacccaataaattaagccctcgaattgatggacctcccacaccagcttccctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctttgagatttgaggggcca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtgggg
acacctctgcggtttgagggcccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctccaggtggtttgcgatttgagggaccagga
ggccagcctgtgggtggtctgaggtttgagggacatcgtggtcaacctgtgggtggtcta
aggtttgaaggacctcatggtcagcctgtgggtggacttagatttgataatcctcgaggt
cagcctgtaggtggacttagatttgaggggggtcatggtccatcaggggctgcgattagg
tttgatggacctcatggtcagccaggaggtggaatcagatttgagggccctttgctacag
caaggggttggaatgaggtttgagggcccccatggtcagtcagtagctggtctgagattt
gagggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaacca
gcagttggtatcaggtttgaaggccctttagttcaacaaggaggtggaatgaggtttgag
ggtccttctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccgtcactcttg
ccaagatttgatggattacatggtcagccaggtcctagatttgaaaggactcctggtcag
ccaggccctcagaggtttgatggaccacctggacagcaggttcaacccagatttgatggt
gtacctcaaagatttgatggtccacaacatcagcaagcatcacggtttgatattcctctt
ggtcttcaaggcacaagatttgacaatcatccttcacaaaggcttgaatcagtatctttc
aatcagactggtccatataatgatccacctggcaatgcttttaatgccccatcccaagga
ctacagttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatgga
ccacatggccctggaaaccagagtttctctaatccacttaacagagcttctggacactat
tttgatgaaaaaaatcttcagagttctcaatttggaaactttggcaatatacctgctcca
atgacagtaggaaatattcaggcatctcaacaggttctgagtggtgttgctcagccagta
gcttttggtcaaggacaacagtttttaccagttcatccacaaaatcctggatttgttcag
aatccttcaggagccctccctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattgttttcaaaattgctaaaaacaggaattctcaaattgtcccaaactgattca
gctacaacacaagtaagtgaagtagctgctcagcctccccctgaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttactaattttacagttgaagagttgaaacaacgt
tatgacagtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtttatgcggatcatttggactggcattatcggcaaaat
agaactgaaaaggatgttagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggagatagctgatctggaagaacgggcaaagagccagtttttt
gaaaaggtgcatgaagaagttgtgctcaaaactcaagaggctgctaaagaaaaagagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaa
tttgaacaatactgggatgaagaagaggaggaatggcatttgaaaaatgctattagagta
gatggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaaccccttgaatattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
acaccaccagcttgtacagaggaaagcgtagcaacaccctctgaaattaaaacagaaaat
gacacagtcgagtcagtttaa
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integrated database retrieval system
