Pongo pygmaeus (Bornean orangutan): 129014598
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Entry
129014598 CDS
T10128
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X2
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04140
Autophagy - animal
ppyg04148
Efferocytosis
ppyg05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
129014598 (VPS39)
04148 Efferocytosis
129014598 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129014598 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppyg04131
]
129014598 (VPS39)
Membrane trafficking [BR:
ppyg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
129014598 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
KCTD11_21_C
Beta-prop_WDR36-Utp21_1st
Lgl_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
129014598
NCBI-ProteinID:
XP_054308046
LinkDB
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Position
16:complement(47387459..47437096)
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEIS
SCYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHSKLDTTKALNLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccagtgccgatcctagaaaagctgcctctgcaaatcgactgt
ctggctgcctgggaggaatggcttcttgtgggaaccaaacaaggacatcttcttctctat
aggattcggaaggacgttggttgcaacagatttgaagtgacactggagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttatgtccatgacctattgacatttcaacaaatcactacggtt
tcaaaggcaaagggagcatcactgtttacttgtgacctccagcacacagagaccggtgag
gaggtgttacggatgtgtgtggcagtaaaaaagaagctgcagctctatttctggaaggac
agggaatttcatgaattgcagggggactttagtgtgccagatgtgcccaagtccatggcg
tggtgtgaaaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaggggtccatcaaagagctctttccaacaggaaaacagctggagcccttagttgca
cctctggcagatggaaaagtggctgtgggccaggatgatctcaccgtggtactcaatgag
gaagggatctgcacacagaaatgtgccctgaactggacggacataccagtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgttgagatccgaacatttgaa
ccgaggcttttggtccaaagcattgaattgcaaaggccccgtttcattacctcaggagga
tcaaacattatctatgtggccagcaatcattttgtttggagactcatccctgtccccatg
gcaacccaaatccaacaacttctccaggacaagcagtttgaattggctctgcagctcgca
gaaatgaaagatgattccgacagtgaaaagcagcaacaaattcatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaaa
cttggcacagatcccacccatgtgatgggcctgtaccctgacctgctgcccacagactac
agaaagcagctgcagtatcccaacccattgcctgtgctctccggggctgaattggagaag
gctcacttagctctgattgactacctgacacagaaacgaagtcaattggtaaagaagctg
aatgactctgatcaccagtcaagtacctccccgctcatggaaggcactcccaccatcaaa
tccaagaagaagctgctacaaatcatcgacaccaccctgctcaagtgctatctccatacg
aatgtggccctggtggcccccttgctacgcctggagaacaatcactgccacatcgaggag
agcgagcatgtgctgaagaaggctcacaagtacagtgagcttatcatcctgtatgagaag
aaggggctccacgagaaagctctgcaggtgcttgtggaccagtccaagaaagccaactcc
cctctgaaaggccacgagaggacagtgcagtatctgcagcatctgggcacagaaaacctg
catttgattttctcctactcagtgtgggtactgagagacttcccagaagatggcctgaag
atatttactgaagatctcccggaagtggagtctctgccacgtgatcgagtcctcggcttc
ttaatagagaattttaagggtctggctattccttatctggaacacatcatccacgtttgg
gaggagacgggctctcggttccacaactgcctgatccagctctactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaaaccccagtcccagctgga
gaggaagagggtgagctgggagaataccggcaaaagctcctcatgttcttggagatttcc
agctgctatgatccaggccggctcatctgtgattttccctttgatggcctcttagaagaa
cgagctcttctgttggggcgcatggggaaacatgagcaagctcttttcatttatgtccac
atcttgaaggatacaaggatggctgaggagtattgccacaaacactatgaccaaaacaaa
gatggcaacaaagatgtgtatctgtccctgcttcggatgtacctgtcgccccccagcatt
cactgcctggggccaatcaagctggaactactggagccaaaagccaacctccaggccgct
ctgcaggtcctcgagctgcaccacagcaaactggacaccaccaaggccctcaaccttctg
ccagcaaacactcagatcaatgacatacgcatcttcctggaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtactcaagaaccttctccatgcagagttcctgagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gtcgtgcactacttctgttccaaagaggtaaacccagctgacacttga
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integrated database retrieval system
