Pongo pygmaeus (Bornean orangutan): 129015544
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Entry
129015544 CDS
T10128
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X2
KO
K10897
partner and localizer of BRCA2
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03440
Homologous recombination
ppyg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129015544 (PALB2)
03460 Fanconi anemia pathway
129015544 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppyg03400
]
129015544 (PALB2)
DNA repair and recombination proteins [BR:
ppyg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
129015544 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
129015544 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_WDR19_1st
Microp_apicomplexa_20
Motif
Other DBs
NCBI-GeneID:
129015544
NCBI-ProteinID:
XP_054309655
LinkDB
All DBs
Position
18:complement(26234110..26271168)
Genome browser
AA seq
1186 aa
AA seq
DB search
MEELPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ
QELSLQLNHSEPKNKICVYDKLHIKTHLDEETGEKTSTTLDVGPESFNPGGGPGGLPIQR
TDDTQEHFPHRVSDPDGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE
EISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP
NFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVFT
DNLLVNEAISKSGQLPTGSNLEANISHSLNELTHNNLPANENQNLKEQNQTEKSLKSPSD
VLDGRNENLQENEILSQPKSLSLEATSPLSAEKHSCTMLEGLLFPAEYYVRTTRSMSNCQ
RKVALEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK
LLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYKGKRKSACTPASDHCEPLLPSSSPLVVN
RSKEEVTSHKYQHEKFLIRVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL
KQLLSFLSITDFQLPDEDFGPLKLEKLKSCSEKPVEPFESKMFGERHLKEGNCIFPEELS
PKRMDTEVEDLEEDLIVLPGKSHPKRPNPQSQHTKTGLSSSILLYTPLNTVVPDDNDRPT
TDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSG
SPAKAHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLGRNTCQELHKHSIEQTE
TAELPASDSINPGNLQLVSKLKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA
LDAWQWEKLCTWHFTEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL
LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ
GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK
ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW
DLLLGQCTALLPPISDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcttcccgggaagcccctcagctgtgaggagaaggaaaagttaaaggagaaa
ttagcattcttgaaaagggaatacagcaagacactagcccgccttcagcgtgcccaaaga
gctgaaaagattaagcattctattaagaaaacagtagaagaacaagattgtttgtcccag
caggagctctcactgcagctaaaccactcagaacctaaaaataaaatatgtgtttatgac
aagttacacatcaaaacccatcttgatgaagaaactggagaaaagacatctaccacactt
gatgttgggcctgagtcctttaaccctggaggtggcccaggaggattacctatacaaaga
acagatgacacccaagaacattttccccacagggtcagtgaccctgatggtgagcaaaag
cagaagctgccaagcagaagaaagaagcagcagaagagaacgtttatttcacaggagaga
gactgtgtctttggcactgattcgctcagattgtctgggaaaagactaaaggaacaggaa
gaaatcagtagcaaaaatcctgctagatcaccagtaactgaaataagaactcacctttta
agtcttaagtctgaacttccagattctccagaaccagttacagaaattaatgaagacagt
gtattaattccaccaactgcccaaccagaaaaaggtgttgatacattcctaagaagacct
aatttcaccagggcgactacagttcctttacagactctatcagatagcggtagtagtcag
caccttgaacacattcctcctaaaggtagcagtgaacttactactcacgacctaaaaaac
attagatttacttcacctgtaagtttggaggcacaaggcaaaaaaatgactgtctttaca
gataacctccttgtaaatgaagctataagtaaaagtggccaactgcccacaggttctaat
ttagaggcaaatatttcacattctctaaatgaactcactcacaataacttaccagcaaat
gaaaaccaaaacttaaaagaacaaaatcaaacagagaaatctttaaaatctcccagtgac
gttcttgatggcagaaatgaaaatcttcaggaaaatgagattctaagtcaacctaagagt
cttagcctggaagcaacctctcctctttctgcagaaaaacattcttgcacaatgcttgaa
ggccttctgtttcctgcagaatattatgttagaacaacacgaagcatgtccaattgccag
aggaaagtagccctggaggctgtcattcagagtcatttggatgtcaagaaaaaagggttt
aaaaataaaaataaggatgcaagtaaaaatttaaacctttccaatgaggaaactgaccaa
agtgaaattaggatgtctggcacatgcacaggacaaccaagttcaagaacctctcagaaa
cttctctcattaactaaagtcagctctcccgctgggcccactgaagataatgacttgtct
aggaaggcagttgcccaggcacctggtagaagatacaaaggaaaaagaaaatcagcctgc
accccagcatcagatcattgtgaaccacttttgccaagttccagcccattggttgttaac
aggtccaaggaggaagtcacctcgcacaaatatcagcacgaaaaattccttattcgagtg
aaagggaagaaaagtcgtcatcaaaaagaggattccctttcttggagtaacagtgcttat
ttatccttggatgatgatgctttcacggctccatttcatagggatggaatgctgagttta
aagcaactactgtcttttctcagtatcacagactttcagttacctgatgaagactttgga
cctcttaagcttgaaaaactgaagtcctgctcagaaaaaccagtggagccctttgaatca
aaaatgtttggagagagacatcttaaagagggaaactgtatttttccagaggaactgagt
cctaaacgcatggatacagaagtggaggacttagaagaagatcttattgttctaccagga
aaatcacatcccaaaaggccaaacccacaaagccagcatacaaagacgggcctttcttca
tccatattactttatactcctttaaatacggttgtgcctgatgataatgacaggcctacc
acagacatgtgttcacctgctttccccatcttaggtactactccagcctttggccctcaa
ggctcctatgaaaaagcatctacagaggttgctggacgaacttgctgcacaccccagctt
gctcatttgaaagactcagtctgtcttgccagtgatactaaacaattcgacagttcaggc
agcccagcaaaagcacacaccaccctgcaagtgtcaggcaggcaaggacaacctacctgt
gactgtgactctgtcccgccaggaacacctccacccattgagtcattcacttttaaagaa
aatcagctcggtagaaacacatgccaggagttgcataaacattccatcgaacagactgaa
acagcagagcttcctgcttctgatagcataaacccaggcaacctacagttggtttcaaag
ttaaagaatccttcaggttcctgttccgtagatgtgagtgccatgttttgggaaagagcc
ggttgtaaagagccatgtatcataactgcttgcgaagatgtagtttctctttggaaagct
ctggatgcttggcagtgggaaaaactttgtacctggcacttcacagaggttccagtatta
cagatagttccagtgcctgatgtgtataatctcgtgtgtgtagctttgggaaatttggaa
atcagagagatcagggcattgttttgttcctctgatgatgaaagtgaaaagcaagtacta
ctgaagtctggaaatataaaagctgtgcttggcctgacaaagaggaggctagttagtagc
agtgggaccctttctgatcaacaagtagaagtcatgacgtttgcagaagatggaggaggc
aaagaaaaccaatttttgatgccccctgaggagactatactaacttttgctgaggtccaa
gggatgcaagaagctctgcttggtactactattatgaacaacattgttatttggaattta
aaaactggccaactcctgaaaaagatgcacattgatgattcttaccaagcttcagtctgt
cacaaagcctattctgaaatggggcttctctttattgtcctgagtcatccctgtgccaaa
gagagtgagtcgttgcgaagccctgtgtttcagctgattgtgattaaccctaagacgact
ctcagcgtgggtgtgatgctgtactgtcttcctccagggcaggctggcaggttcctggaa
ggtgatgtgaaagatcactgtgcagcagcaatcttgacttctggaacaattgccatttgg
gacttacttcttggtcagtgtactgccctcctcccacctatctctgaccaacattggtct
tttgtgaaatggtcaggtacagactctcatttgctggctggacaaaaagatggaaatata
tttgtataccactattcataa
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