KEGG   Pongo pygmaeus (Bornean orangutan): 129018300
Entry
129018300         CDS       T10128                                 
Symbol
CPSF4L
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
ppyg  Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03015  mRNA surveillance pathway
ppyg05164  Influenza A
Brite
KEGG Orthology (KO) [BR:ppyg00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    129018300 (CPSF4L)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    129018300 (CPSF4L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppyg03021]
    129018300 (CPSF4L)
   03019 Messenger RNA biogenesis [BR:ppyg03019]
    129018300 (CPSF4L)
Transcription machinery [BR:ppyg03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     129018300 (CPSF4L)
Messenger RNA biogenesis [BR:ppyg03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     129018300 (CPSF4L)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3 zf-CCCH_12 zf-CCCH_4 zf-CCCH_RBM22 Nab2-like_zf-CCCH_ zf-CCCH_UNK zf-C3H1
Other DBs
NCBI-GeneID: 129018300
NCBI-ProteinID: XP_054315858
LinkDB
Position
19:complement(91459655..91473133)
AA seq 179 aa
MQEVIAGLERFTFAFEKDVEMQKGAGLLPFQGMNKSASAVCNFFTKGLCEKGKLCPFRHD
RGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECPFLHVKPAFK
SQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQFAQNIREFKLLPGSKI
NT seq 540 nt   +upstreamnt  +downstreamnt
atgcaagaggtcattgcagggctggagcggttcacctttgccttcgagaaggatgtcgag
atgcagaagggcgctgggctcctgcctttccagggcatgaacaagtcggcttcagctgtg
tgcaacttcttcactaaagggctctgtgagaaagggaaactctgccccttccgacatgac
cgaggggagaagatggtggtgtgcaagcactggctccgggggctgtgcaagaagggtgat
cactgcaagttcctgcaccagtatgacctcaccaggatgcctgagtgctacttctactcc
aagtttggtgactgcagcaacaaggagtgtcctttcctccatgtgaagccagctttcaag
tcccaggactgtccttggtatgaccaaggtttctgcaaggacggtcctctgtgtaaatac
cgccatgtccccagaataatgtgtctcaactatttagttggcttctgccccgagggaccc
aagtgccaatttgctcagaatattcgggaattcaagctgctgcctggaagcaagatctaa

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