Pongo pygmaeus (Bornean orangutan): 129019462
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Entry
129019462 CDS
T10128
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03030
DNA replication
ppyg03410
Base excision repair
ppyg03420
Nucleotide excision repair
ppyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129019462 (LIG1)
03410 Base excision repair
129019462 (LIG1)
03420 Nucleotide excision repair
129019462 (LIG1)
03430 Mismatch repair
129019462 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppyg03032
]
129019462 (LIG1)
03400 DNA repair and recombination proteins [BR:
ppyg03400
]
129019462 (LIG1)
Enzymes [BR:
ppyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129019462 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
129019462 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129019462 (LIG1)
DNA replication proteins [BR:
ppyg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129019462 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129019462 (LIG1)
DNA repair and recombination proteins [BR:
ppyg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129019462 (LIG1)
NER (nucleotide excision repair)
Other NER factors
129019462 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
129019462 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Presenilin
PucR
DUF1685
DDR
Motif
Other DBs
NCBI-GeneID:
129019462
NCBI-ProteinID:
XP_054317998
LinkDB
All DBs
Position
20:complement(54165077..54218935)
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKVKKPEKEASNSSRETEPPPKAALKEWNGVVSESDSPVKRPGRKA
AQVLGSEGEEEDEALSPAKGQKPAPDCSQVSPPCPATSPENNASLSDTSPMDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSEDEDRDAKRKKEEEEAETTKESLTEAEVATEKEGEDGDQ
PTTPPKPLKTSKAETPTESVSEPEEATKQELQEEEEQTKPPPRAPKTLSSFFTPRKPAIK
KEVKEEKPGAPGKEGTAEGPLDPCGYNPAKNNYHPLEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRHLESVRAEAAEKGDMGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACHHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDHEKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccaagaaagagggtaaagtgaagaagcct
gagaaggaggcatccaacagcagcagagagacggagccgcctccaaaggcggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccagggaggaaggcg
gcccaggtcctgggcagcgaaggggaagaggaggatgaagcccttagccctgctaaaggc
cagaagcctgccccagactgctcacaggtctccccgccctgtcctgccacatctcctgaa
aacaacgcttccctctctgacacctctcccatggacagttccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgaggacgaggacagagacgccaagaggaagaaggaggaggaagaagcagagaccacg
aaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacggggaccag
cccaccacgcctcccaagcccctgaagacctccaaagcagagaccccgacggaaagcgtt
tcagagcctgaggaggccacgaagcaggaactgcaggaggaggaggagcagaccaagcct
cccccgagagctcccaagacgctcagcagcttcttcaccccccggaagccagcaatcaaa
aaagaagtgaaggaagagaagccgggggctccaggaaaggagggaactgctgagggaccc
ttggacccatgcggttacaatcctgccaagaacaactatcatcccttggaagatgcctgc
tggaaaccgggccagaaggtcccttacctggccgtggcccggacgtttgagaagatcgag
gaggtgtctgctcggctccggatggtggagacgctgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctccctgtcctctacctcagcctcaaccaccttgggcca
ccccagcagggcctggagcttggcgtgggtgatggcgtccttctcaaggcggtggcccag
gccacaggtcggcatctggagtccgtccgggctgaggcagccgagaaaggcgacatgggg
cttgtggccgagaatagccgcagcacccagaggctcatgctgccaccacctccgctcact
gcctccggggtcttcagcaagttccgcgacatcgccaggctcaccggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccaccactcagaagcccgg
ttcatcgccaggtccctgagcggacggctgcgccttgggctggcagagcagtcggtgctg
gccgccctctcccaagccgtgagcctcacgcccccaggccaagaattcccaccagccgtg
gtggatgctgggaagggcaagacagcagaggcccgaaagacttggctggaggagcaaggc
atgatcctaaagcagacattctgcgaggttcccgacctggaccgaattatccccgtgctg
ctggagcacggcctggaacgtctcccggagcactgcaagctgagtccagggattcccctg
aaaccaatgttggcccatcccacgcggggcgtcagcgaggtcctgaaacgctttgaggag
gcagctttcacctgtgaatacaaatatgatgggcagagggcacagatccacgccctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaacactgggaagtacccggac
atcatcagccgcatccccaagattaaacttccatcggtcacatcctttatcctggacacc
gaagctgtggcttgggaccatgaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggatgcatccgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgccacctccctggac
accaaggacgtcgagcagatcgctgagttcctggagcagtcggtgaaagactcctgcgag
gggctgatggtgaagaccctggatgttgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgttg
gcctcctacgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgacgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagccca
cgcccttacgtgcggatagatggtgctgtgattcccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgtgctgacctctccctctcccccatctaccctgctgcgcggggc
ctggtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcccaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa
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