Pongo pygmaeus (Bornean orangutan): 129020085
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Entry
129020085 CDS
T10128
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03082
ATP-dependent chromatin remodeling
ppyg04714
Thermogenesis
ppyg05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129020085 (SMARCA4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
129020085 (SMARCA4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
129020085 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppyg03021
]
129020085 (SMARCA4)
03036 Chromosome and associated proteins [BR:
ppyg03036
]
129020085 (SMARCA4)
Transcription machinery [BR:
ppyg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129020085 (SMARCA4)
Chromosome and associated proteins [BR:
ppyg03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
129020085 (SMARCA4)
Chromatin remodeling factors
BAF complex
129020085 (SMARCA4)
PBAF complex
129020085 (SMARCA4)
GBAF(ncBAF) complex
129020085 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
129020085
NCBI-ProteinID:
XP_054319881
LinkDB
All DBs
Position
20:11215568..11316489
Genome browser
AA seq
1679 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGQ
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
DSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKK
SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDA
VIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKD
VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSES
ESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccacccctgggtggaactcctcggccgggtccttccccgggccct
ggcccttcccctggagccatgctgggccctagcccgggtccctcgccgggctccgcccac
agcatgatgggacccagcccggggccaccctcagcaggacaccccatccccacccagggg
cctggagggtaccctcaggacaacatgcaccagatgcacaagcccatggagtccatgcac
gagaagggcatgtcggacgacccgcgctacaaccagatgaaaggaatggggatgcggtca
gggggccatgctgggatggggcccccgcccagccccatggaccagcactcccaaggttac
ccctcgcccctgggtggctcagagcatgcctctagtccagttccagccagtggcccgtct
tcgggcccccagatgtcttccgggccaggaggtgccccgctggatggtgctgacccccag
gccttggggcagcagaaccggggcccaaccccatttaaccagaaccagctgcaccagctc
agagctcagatcatggcctacaagatgctggccagggggcagcccctccccgaccacctg
cagatggcggtgcagggcaagcggccaatgcccgggatgcagcagcagatgccaacgcta
cctccaccctcagtgtccgcaacaggacctggccctggccctggccccggccccggccag
ggtcctggcccggcacctccaaattacagcaggcctcatggtatgggagggcccaacatg
cctcccccaggaccctcaggcgtgccccccgggatgccaggccagcctcctggagggcct
cccaagccctggcctgaaggacccatggcgaatgctgctgcccccacgagcacccctcag
aagctgattcccccgcagccaacgggccgcccttcccccgcgccccctgccgtcccaccc
gctgcctcgcccgtgatgccaccacagacccagtcccctgggcagccggcccagcccgcg
cccatggtgccgctgcaccagaagcagagccgcatcacccccatccagaagccgcggggc
ctcgaccctgtggagatcctgcaggagcgcgagtacaggctgcaggctcgcatcgcacac
cgaattcaggaacttgaaaaccttcccgggtccctggccggggatttgcgaaccaaagcg
accattgagctcaaggccctcaggctgctgaacttccagaggcagctgcgccaggaggtg
gtggtgtgcatgcggagggacacagcgctggagacagccctcaatgctaaggcctacaag
cgcagcaagcgccagtccctgcgcgaggcgcgcatcactgagaagctggagaagcagcag
aagatcgagcaggagcgcaagcgccggcagaaacaccaggaatacctcaatagcattctc
cagcatgccaaggatttcaaggaatatcacagatcggtcacaggcaaaatccagaagctg
accaaggcagtggccacgtaccacgccaacacagagcgggagcagaagaaagagaacgag
cggatcgagaaggagcgcatgcggaggctcatggctgaagatgaggaggggtaccgcaag
ctcatcgaccagaagaaggacaagcgcctggcctacctcttgcagcagacagacgagtac
gtggctaacctcacggagctggtgcggcagcacaaggccgcccaggtcgccaaggagaaa
aagaagaaaaagaaaaagaagaaggcagaaaatgcagaaggacagacgcctgccatcggg
ccagatggcgagcctctggacgagaccagccagatgagcgacctcccggtgaaggtgatc
catgtggagagcgggaagatcctcacaggcacagatgcccccaaagccgggcagctggag
gcctggctcgagatgaacccggggtatgaagtagctccgaggtctgatagtgaagaaagt
ggctcagaagaagaggaagaggaggaggaggaagagcagccgcaggcagcacagcctccc
accctgcccgtggaggagaagaagaagattccagatccagacagcgatgacgtctctgag
gtggacgcgcggcacatcattgagaacgccaagcaagatgtcgatgatgagtatggcgtg
tcccaggcccttgcacgtggcctgcagtcctactatgccgtggcccacgctgtcactgag
agagtggacaagcagtcagcgcttatggtcaatggtgtcctcaaacagtaccagatcaaa
ggcttggagtggctggtgtccctgtacaacaacaacctgaacggcatcctggctgacgag
atgggcctagggaagaccatccagactatcgcactcatcacgtacctcatggagcacaaa
cgcatcaacgggcccttcctcatcatcgtgcctctctcaacgctgtccaactgggcgtac
gagtttgacaagtgggctccctccgtggtgaaggtgtcttacaagggatccccagcagca
agacgggcctttgtcccccagctccggagtgggaagttcaacgtcttgctgacaacatac
gagtacatcatcaaagacaagcacatcctcgccaagatccgttggaagtacatgattgtg
gacgaaggtcaccgcatgaagaaccaccactgcaagctgacgcaggtgctcaacacgcac
tatgtggcaccccgccgcctgctgctgacgggcacaccgctgcagaacaagcttcccgag
ctctgggcgctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgag
cagtggtttaacgcacccttcgccatgactggggaaaaggtggacctgaatgaggaggaa
accattctcatcatccggcgtctccacaaagtgctgcggcccttcttgctccgacgactc
aagaaggaagtcgaggcccagttgcccgaaaaggtggagtacgtcatcaagtgcgacatg
tctgcgctgcagcgagtgctctaccgccacatgcaggccaagggggtgctgctgactgac
ggctccgagaaggacaagaagggcaaaggcggcaccaagaccctgatgaacaccatcatg
cagctgcggaagatctgcaaccacccctacatgttccagcacatcgaggagtccttttcc
gagcacttggggttcactggcggcattgtccaagggctggacctataccgagcctcgggt
aaatttgagcttctcgatagaattcttcccaaactccgagcaaccaaccacaaagtgctg
ctgttctgccagatgacctccctcatgaccatcatggaagattactttgcatatcgcggc
tttaaatacctcaggcttgatggaaccacgaaggcggaggaccggggcatgctgctgaaa
accttcaacgagcccggctccgagtacttcatcttcctgctcagcacccgggctgggggg
ctcggcctgaacctccagtcggcagacactgtgatcattttcgacagcgactggaatcct
caccaggacctgcaagcgcaggaccgagcccaccggatcgggcagcagaacgaggtgcgt
gtgctccgcctctgcaccgtcaacagcgtggaggagaagatcctagctgcggccaagtac
aagctcaacgtggaccagaaggtgatccaggccggcatgttcgaccagaagtcctccagc
cacgagcggcgagccttcctgcaggccatcctggagcacgaggagcaggacgagagcaga
cactgcagcacgggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggc
gtcaaccccgacttggaggagccacctctaaaggaggaagacgaggtgcctgacgacgag
accgtcaaccagatgatcgcccggcatgaggaggagtttgatctgttcatgcgcatggac
ctggaccgcaggcgcgaggaggcccgcaaccccaagcgaaagccgcgcctcatggaggag
gacgagctcccctcatggatcatcaaggacgatgcggaggtggagcggctgacctgtgag
gaggaggaggagaagatgttcggccgtggctcccgccaccgcaaggaggtggactacagc
gactcactgacggagaagcagtggctcaagaaaattacaggaaaagatatccatgacaca
gccagcagtgtggcacgtgggctacaattccagcgtggccttcagttctgcacacgtgcg
tcaaaggccatcgaggagggcacgctggaggagatcgaagaggaggtccggcagaagaaa
tcatcacggaagcgcaagcgagacagcgacgccggctcctccaccccgaccaccagcacc
cgcagccgcgacaaggatgacgagagcaaaaagcagaagaagcgcgggcggccgcctgcc
gagaagctctccccaaacccgcccaacctcaccaagaagatgaagaagattgtggatgcc
gtgatcaagtacaaggacagcagcagtggacgtcagctcagcgaggtcttcatccagctg
ccctcgcgaaaggagctgcccgagtactacgagctcatccgcaagcccgtggacttcaag
aagataaaggagcgcatccgcaaccacaagtaccgcagcctcaacgacctagagaaggac
gtcatgctgctgtgccagaacgcacagaccttcaacctggagggctccctgatctatgaa
gactccatcgtcttgcagtcggtcttcaccagcgtgcggcagaaaatcgagaaggaggat
gacagtgaaggcgaggagagtgaggaggaggaagagggcgaggaggaaggctccgaatcc
gaatctcggtccgtcaaagtgaagatcaagcttggccggaaggagaaggcacaggaccgg
ctgaagggcggccggcggcggccgagccgagggtcccgagccaagccggtcgtgagtgac
gacgacagtgaggaggaacaagaggaggaccgctcaggaagtggcagcgaagaagactga
DBGET
integrated database retrieval system
