Pongo pygmaeus (Bornean orangutan): 129020651
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Entry
129020651 CDS
T10128
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03018
RNA degradation
ppyg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129020651 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
129020651 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129020651 (LSM4)
03041 Spliceosome [BR:
ppyg03041
]
129020651 (LSM4)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129020651 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
129020651 (LSM4)
Spliceosome [BR:
ppyg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129020651 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
129020651
NCBI-ProteinID:
XP_063514543
LinkDB
All DBs
Position
20:complement(18742762..18758909)
Genome browser
AA seq
161 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGGSPLSSGCTW
GGKIATCGIPPSWGWPSWLVPSQALPRSLPTLPGPPPGPWP
NT seq
486 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttgtcactgctgaagacggctcagaatcaccccatgttggtggagctgaaa
aatggggagacgtacaatggacacctggtgagctgcgacaactggatgaacattaacctg
cgagaagtcatctgcacgtccagggatggggacaagttctggcggatgcccgagtgctac
atccgcggcagcaccatcaagtacctgcgcattcccgacgagatcatcgacatggtcaag
gaggaggtggtggccaagggccgcggccgcgggggcctgcagcagcagaagcagcagaaa
ggccgcggcatgggcggcgctggccgaggtgggtctcccctctccagtggatgtacctgg
ggtgggaagatagccacatgcggcatccctccttcttggggttggccttcttggctggtg
ccctcgcaagcgctgcctcggagcctcccgactctcccgggcccccctcctggtccttgg
ccatga
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integrated database retrieval system
