Pongo pygmaeus (Bornean orangutan): 129021616
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Entry
129021616 CDS
T10128
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
129021616 (COL20A1)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
DUF4959
Motif
Other DBs
NCBI-GeneID:
129021616
NCBI-ProteinID:
XP_054323238
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All DBs
Position
21:66022980..66065084
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AA seq
1315 aa
AA seq
DB search
MSSGAPAHLGLCLWLWLGATLGKEQGRASGLLRLSVLPEDRLQMKWRESEGSGLGYLVQV
KPMAGDSEQEVILTTKTPKATVGGLSPSKGYTLQIFELTGSGRFLLARREFVIEDLKSSS
LDRSSQRTLGSGAPEPTPSHVGSPDPEQASEPRVAFTPSQDPPTPAGPQFRCLPPVPADM
VFLVDGSWSIGYSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLGTKE
QVLAAVRRLRYKGGNTFTGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDVHTAA
RVLKDLGVNVFAVGVKNADEAELKLLASPPQDITVHSVLDFLQLGALAGLLSRLICQRLQ
GGSPRQGPAAAAPALDTLPSPTSLVLSQVTSSSIRLSWTPAPRLPLKYLIVWRASRGGTP
REVVVEGPAASTELHNLASRTEYLVSVFPIYESGVGEGLRGLVTTAPLPPPRALTLAAVT
PRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSL
RGPEGSEARGIRARTPALATPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHS
GQTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSQLSVAELP
GDAVQLAWVAAAPSGVLVYQITWTPLGEGKSHEISVPGNLGTAVLPGLRRHTEYDVTILA
YYRDGARSDPVSLRYTPSTVSRSSPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPAS
GLGPEKSVSVPGPRSHVTLPNLQAATKYRVLVSAVYAAGRSEAVSAMGQTAACPALRPDG
SLPGFDLMVAFGLVEKAYASIRGVAMEPSAFGGTPTFTLFKDAQLTRRVSDVHPAPLPPE
HTIVFLVRLLPETPREAFALWQMTAEDFQPLLGVLLDAGRKSLTYFHRDPRAALQEATFD
LHEVRKIFFGSFHKVHVAVGRSKVRLYVDCQKVAERPLGEVGSPPAAGFITLGRLAKARG
PRSSSAAFQLQTLQIVCSDTWANEDRCCELPASRDGETCPAFMSACSSETPGPPGPQGPP
GLPGKNGTPGDPGFPGPRGEPGPPGQMGPEGPGGQQGSPGTQGRTVQGPVGPPGVKGDKG
DHGLPGLQGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERG
PPGAVGPTGLPGPKGERGEKGEPQSLATLYQLVSQACESAVQTHVSKFDSFHENTRLPMP
ILEQKLESGTEPLGSPGTHSKALLPGEWGRGGRHLEGRGEPGAVGQTGSPGQQGG
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgagctccggagcccctgcacacctcggcctctgcctctggctgtggctgggcgccacc
ctgggaaaagagcaaggacgagcaagtggcctcctgaggctgtctgtgctgcctgaggac
cggctgcagatgaagtggagagagtcggaggggagcggcctcggctacctggtgcaggtg
aagcccatggcaggggactcggaacaggaggtgatactgaccaccaagacccctaaggcc
acagtggggggcctgagcccctccaagggctacaccttgcagatcttcgagctcactggc
tctgggcgcttcctgctggctcggagggagtttgtgattgaggatctgaagagtagctcc
ctggacagaagcagccagaggaccctcggctctggagccccggagcccaccccctcccat
gtggggagcccagaccctgagcaggcttctgagccccgagttgccttcacgccaagccag
gatccgcccactcctgccggcccccagttccgctgcctgccccccgtgcctgctgacatg
gtcttcctggtggacgggtcctggagcatcggctacagtcacttccagcaagtcaaggac
ttcctggccagcgtcatcgcaccctttgaaatcgggccagataaggtccaagtaggcctg
actcagtacagcggggatgcccagactgagtgggacctgaattccctcggcaccaaggag
caggtgctagcagctgtgcgccgcctccgctacaagggggggaacacgttcacaggcctt
gccctgacccacgtgctggggcagaacctgcagccagcggctggcctccgtccagaggcg
gccaaggtggtgattctggtgacggacggcaagtcccaggacgacgtgcacactgctgcc
cgtgtcctcaaggacttgggcgtgaacgtcttcgctgtgggtgtgaagaacgccgatgag
gctgagctgaagctcctggcgtccccgccacaggacatcaccgtccacagcgtactggac
ttcctgcagcttggcgcgctggctggcctgctcagccgcctcatctgccagaggctccag
ggtgggagcccgcggcagggcccagcagcagcggctccagccctggacaccctcccctcc
cccaccagcctggtcctgagccaggtgacctcctccagcatccgcctgtcctggactcca
gccccccggctccccctcaagtatctgatcgtttggcgagcctccagaggtggcaccccc
agggaggtggtggtggaggggcccgccgcctccacagagctgcacaacctggcctcccgc
acagagtacctggtctctgtgttccccatctatgagagcggggttggcgaaggcctgcgg
ggcctggtgaccacagcacctctgcctcctccccgggcgctgaccctggccgcagtgacg
cccagaaccgtccacctcacctggcagccctcggccggggccacccactacctggtgcga
tgttcgcctgcttcccccaagggtgaggaggaggagcgagaggtgcaggtcgggcggccc
gaggtgctgctggatggcctggaaccgggcagggactatgaggtctcggtgcagagcctg
cgaggccctgagggcagcgaggcccggggcatccgtgccaggacccccgccctggcaacc
ccgagacacctgggcttctcagacgtgagccacgacgcggcacgagtgttctgggagggc
gccccgaggcctgtgcgcctggtcagggtcacctatgtctccagtgagggcggacactca
gggcagacagaggctcctgggaacgccacctcggccacgctggggcctctctcttcatcc
accacctacactgtccgcgtcacctgcctctaccctgggggtggctcctccacgctgacc
ggccgggtgaccaccaagaaagctcccagcccaagccagctgtccgtggcggagctgccc
ggggatgcggtccagctggcgtgggtggccgcagccccgtctggcgtgcttgtctaccag
atcacgtggacgcccctgggagaggggaagtctcacgagatctctgtcccagggaacctc
ggcacggccgtcctgcctggcctaaggaggcacacggagtacgacgtcaccatcctggcc
tactacagggacggggcccgcagtgaccctgtgtccctccgctataccccctccacggtg
agcaggagctccccctccaacctggccctggcctcggagacccccgacagcctgcaggtc
agctggacacccccgcttggccgcgtgctccattactggctcacctatgcacccgcctct
ggcttgggacccgagaaatccgtctctgtgccaggacccaggagccacgtgacactcccc
aacctgcaggcagccaccaaatacagggtcctggtctcagctgtctatgcagcaggcagg
agtgaggctgtgtctgccatgggccagacagcagcctgcccagccctccgccccgacggc
tccctcccagggtttgacctgatggtggccttcggcctggtggaaaaggcttatgcttcc
atccggggcgtggccatggagccctctgcctttggtgggaccccgaccttcacgctcttc
aaggacgcccagctgacaagacgggtcagtgacgtccacccagcccccctccctccagag
cacaccatcgtcttccttgtgcgcctgcttcccgagacaccccgtgaggccttcgcgctg
tggcagatgacggccgaggacttccagcccctcctcggggttctgctggacgccgggagg
aagtccctgacctatttccaccgcgaccccagggctgccttgcaggaggccaccttcgac
ctgcacgaagtgaggaagattttcttcgggagtttccacaaggtgcacgtggctgtgggc
cgctctaaggtcaggctctacgtggactgccagaaggtggctgagcggcccctcggggag
gtgggcagcccacccgctgccggcttcatcacgctggggaggctggccaaggccaggggc
ccccggagcagctcggccgcgtttcagctccagacgctgcagatcgtgtgcagtgacacc
tgggccaatgaggaccggtgctgtgagctccctgcctcgagggatggagagacctgcccg
gccttcatgtctgcctgttcctcagagacccctgggcccccaggaccccaaggaccccca
ggcctccctgggaagaatggcaccccaggagatcctggcttcccagggcccaggggagag
cccgggccacccggacagatgggaccagaaggtcctggaggccagcaggggtcgccgggg
acccagggccgcacagtccaggggcctgtgggtccaccaggggtcaaaggagacaaagga
gaccatgggctcccaggcttgcagggccaccccggccaccagggcatccccgggagagtt
ggcctccagggaccaaagggaatgagaggcctggagggaactgctggcctgcccggaccc
cctggccccagggggttccagggcatggcaggggccaggggcactagtggagagcgagga
cctccaggggccgtggggcccacagggctgccggggcccaaaggggaacgaggagagaag
ggcgagccgcagtcccttgccaccctctaccaacttgtgagccaggcttgtgagtctgcc
gttcagacacacgtgtcaaagttcgactccttccacgagaacaccaggcttcccatgccc
atcttggagcagaagctggagtcgggcactgagcccctggggtcccctggcacccacagc
aaggccctgcttcctggagaatgggggcgtggtggccgccaccttgagggcagaggggag
cctggagctgttggtcagacgggcagccctgggcagcaggggggctag
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