Pongo pygmaeus (Bornean orangutan): 129022268
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Entry
129022268 CDS
T10128
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04974
Protein digestion and absorption
Brite
Exosome [BR:
ppyg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129022268 (COL18A1)
Proteoglycans [BR:
ppyg00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
129022268 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ppyg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129022268 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129022268
NCBI-ProteinID:
XP_054324269
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All DBs
Position
22:58361430..58477692
Genome browser
AA seq
1524 aa
AA seq
DB search
MAPDPRGCRILLLLFCSLAAARADLLNLNWLWFNNEDTSHAATTIPEPQGPLPAQPTHMA
PRNGSTEPATVPGSPEPPSELLEDGQDTPTSAESPDTPEENIAGVGAKILNVAQGIRSFV
QLWNDTVPTESLTRVETLVLETPVGPFALPGPSSTPQENGTTLWPSRGTPSSPGAHTTEA
GTLPAPTPSPPSLGRPWAPLTGPSVPPSSSERVSEEVGLLQLLGDPPPQQVTQTDDPDVG
LAYVFGPDANSGQVARYHFPSLFFRDFSLLFHIRPATEGPGVLFAITDSAQAVVLLGVKL
SGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFVGQWTHLALSVEGGYVTLYVDCEEFQR
MLLARSSRGLELEPGAGLFVAQAGGADPDKFQGMIAELKVRGDPQVSPMHCLDEEGDDSD
GASGDFGSGLGDARELLREETGAALKPRLPMPPPVTTPPLAGGSSTEDSRSEEIEEQTTV
ASLGAQTLPGSDSVSTWDGSVRTPGDRVREGGLKGQKGEPGVPGPPGRAGPPGSPCLPGP
PGLPCPVSPLGPAGPASPLGPAGPALQPVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKP
GDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGF
GGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGL
PGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGDPGPAGARGESGLAGSPGPAGPPGP
PGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEV
GADGAPGFPGLPGREGIAGPQGPKGDRGSQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVS
EQDGSVLSVPGPEGRPGFAGFPGPAGPKGDLGSKGERGSPGPKGEKGEPGSIFRPDGGAL
GPVQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMR
GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ
FPFDFLQLEAEMKGEKGDPGDAGQKGERGEPGGGGFFGSRLPGPPGPPGPPGYPGIPGPK
GESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPG
PPGPPGTVGASSGQVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVRNGFRKVQLEA
RTPLPRGTDNEVAALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRLPEPQPYP
GAPHHSSYVHLRPARPTSPPAHTHRDFQPVLHLVALNSPLSGSMRGIRGADFQCFQQARA
VGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALFSGSEGPLKPGAR
IFSFDGKDVLRHPTWPQKSVWHGSDPNGRRLTESYCETWRTEAPSATGQASSLLGGRLLG
QNAASCHHAYIVLCIENSFMTASK
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgacccccgaggctgccgcatcctgctgctgctcttctgctccctggcggct
gcccgggccgacctgctgaacctgaactggctttggttcaacaatgaggacaccagccac
gcagctaccacgatccctgagccccaggggcccctgcctgcgcagcccacacacatggcc
ccccggaatggttccacagagccagcgacagtccctggcagccctgaaccaccctcagag
ctgctggaagatggccaggacacccccacttctgccgagagcccggacacgccagaggag
aacattgccggtgtcggagccaagatcctgaacgtggcccaaggcatcaggagcttcgtc
cagctgtggaatgacactgtccccactgagagcttgaccagggtggaaacgctggtcctc
gagactcccgtgggcccctttgccctccctgggccttccagcaccccccaggagaatggg
accactctctggcccagccgtggcactcccagctctccgggcgcccacacgaccgaggct
ggtaccctgcctgcacccaccccatcgcctccctccctgggcaggccctgggcaccactc
acggggccctcggtgccaccatcgtcctcagagcgcgtcagcgaggaggtggggctgctg
cagctccttggggaccccccgccccagcaggtcacccagacggatgaccccgacgtcggg
ctggcctacgtctttgggccagatgccaacagcggccaagtggcccggtaccacttcccc
agcctcttcttccgcgacttctcgctgctgttccacatccggccagccacagagggccca
ggggtgctgtttgccatcacggactccgcgcaggccgtggtcttgctgggcgtgaagctc
tctggggtgcaggacgggcaccaggacatctccctgctctacacggaaccaggtgcaggc
cagacccacacagccgccagcttccggctccccgcctttgtcggccagtggacacactta
gcgctcagcgtggagggtggctatgtgactctctacgtggactgtgaggagttccagaga
atgctgcttgctcggtcctcacggggcctggagctggagcctggtgccgggctctttgtg
gctcaggcgggaggagcggaccctgacaagttccaggggatgatcgctgagctgaaggta
cgcggggacccccaggtgagccccatgcactgcctggacgaggaaggcgatgactcagat
ggggcatccggagactttggcagtgggctcggggacgcccgggagcttctcagggaggag
acgggcgcggccctaaaacccaggctccccatgccaccccctgtcaccactccacccttg
gctggaggcagcagcacggaagattccagaagcgaagaaatcgaggagcagaccacagtg
gcttcgttaggagctcagacacttcctggctcagactctgtctccacgtgggacgggagt
gtccggacccctggggaccgcgtgagagagggcggcctgaaggggcagaaaggggagcca
ggtgttccaggcccacctggccgggcaggacccccaggatccccgtgtctgcctggtccc
ccgggtctcccgtgcccggtgagtcccctgggtcctgcaggcccagcgagtcccctgggt
cctgcaggcccagcgttgcaacctgttcccggaccacaaggacccccagggcctccgggg
agggacggcacccctggaagggacggtgagccgggtgaccctggtgaagacggaaagccg
ggtgataccgggccacagggcttccctgggactccaggggacgtaggccccaagggcgac
aagggagaccctggggttggagagagagggcccccaggaccccaagggcctccggggccc
ccaggaccctccttcagacacgacaagctgaccttcattgacatggagggatctggcttc
ggtggcgatctggaggccctgcggggtcctcgaggcttccctggaccccccggacccccc
ggcgtcccaggcctgcccggcgagccaggccgctttggagtgaacagctccgacgtccca
ggacctgccggccttcctggtgtgcctgggcgcgagggtccccccgggtttcccggcctc
ccgggacccccaggccctccgggaagagaggggcccccaggaaggactgggcagaaaggc
agcctgggtgaagcaggcgccccaggacataagggaagcaagggagaccccggtcctgct
ggcgctcgtggggagagcggcctggcaggatcccctggacccgctggaccaccaggtccc
cctgggccccctgggccaccgggaccaggactccccgctggatttgatgacatggaaggc
tccgggggtcccttctggtcaacagcccgaagcgctgatgggccgcagggaccccccggc
ctgccaggactcaagggagatcctggcgtgcctgggctgccgggggcgaagggagaagtt
ggagcagacggagcccctgggttccccggcctccctggcagagagggcattgctgggccc
caggggccaaagggagacagaggcagccagggagaaaagggagatccagggaaggacgga
gttgggcagccaggcctccctggcccccccggaccgccagggcctgtggtctacgtgtcg
gaacaggacggatccgtcctgagcgtgccgggacctgagggccggccaggtttcgcaggc
tttcccggacctgcaggacccaagggcgacctgggctctaagggcgaacgaggctccccg
ggacccaagggtgagaagggtgaaccgggcagcatcttcaggcccgacggcggtgccctg
ggccctgtccagaaaggagccaagggagagccgggcttccgaggacccccgggtccatac
ggacggccggggtacaagggagagattggctttcctggacggccgggtcgccccgggatg
aacggattgaaaggagagaaaggggagcccggagatgccagccttggatttggcatgagg
ggaatgcccggccccccagggcctccagggcccccaggccctccagggactcctgtttac
gacagcaatgtgtttgcagagtccagccgccccgggcctccaggattgccagggaatcag
ggccctccaggacccaagggcgccaaaggagaagtgggcccccccggaccaccagggcag
tttccgtttgactttcttcagttggaggctgaaatgaagggggagaagggagacccaggt
gacgcaggacagaaaggcgaaaggggtgagcccgggggcggcggtttcttcggctccagg
ctgccaggcccccccggccccccaggcccacctggctaccctgggattccaggtcccaag
ggagagagcatccggggccagcccggcccacctggacctcagggaccccccggcatcggc
tacgaggggcgccagggccctcctggccccccaggcccccccggccccccagggccccct
tcatttcccggccctcacaggcagactatcagcgttcccggccctccgggcccccctggg
ccccctgggccccctggaaccgtgggcgcctcctcagggcaggtgaggctctgggctacg
cgccaggccatgctgggccaggtgcacgaggttcccgagggctggctcatcttcgtggcc
gagcaggaggagctctacgtccgtgtgcggaacgggttccggaaggtccagctggaggcc
cggacgccactcccacgagggacggacaacgaagtggccgccttgcagccccccgtggtg
cagctgcacgacagcaacccctacccacggcgggagcacccccaccccaccgcgcggccc
tggcgggcagacgacatcctggccagcccccctcgcctgcccgagccccagccctacccc
ggagccccgcaccacagctcctacgtgcacctgcggccggcgcgacccacaagcccaccc
gcccacacccaccgcgacttccagcccgtgctccacctggttgcgctcaacagcccattg
tcaggcagcatgcggggcatccgcggggccgacttccagtgcttccagcaggcgcgggcc
gtggggctggcgggcaccttccgcgccttcctgtcctcgcggctacaggacctgtacagc
atcgtgcgccgcgccgaccgcgcagccgtgcccatcgtcaacctcaaggacgagctgctg
tttcccagctgggaggctctgttctcaggctctgagggtccgctgaagcccggggcacgc
atcttctcctttgacggcaaggacgtcctgaggcaccccacctggccccagaagagtgtg
tggcatggctcggaccccaacgggcgcaggctgaccgagagctactgtgagacgtggcgg
acagaggctccctcggccacaggccaggcctcctcgctgctggggggcaggctcttgggg
cagaatgccgcaagctgccatcacgcctacatcgtgctctgcatcgagaacagcttcatg
actgcctccaagtag
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