Pongo pygmaeus (Bornean orangutan): 129023274
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Entry
129023274 CDS
T10128
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppyg03016
]
129023274 (RTCB)
Enzymes [BR:
ppyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129023274 (RTCB)
Transfer RNA biogenesis [BR:
ppyg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129023274 (RTCB)
Prokaryotic type
tRNA splicing ligases
129023274 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
129023274
NCBI-ProteinID:
XP_054325852
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All DBs
Position
23:complement(43382834..43407941)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggagaagatcaataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggcgttttctatgtgaatgat
gctctggagaaattgatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacagattggcaacgtggcagccctgcctggaattgttcat
cgatctattgggcttcctgatgtccattcaggatatgggtttgctattgggaacatggca
gcctttgatatgaatgaccctgaagcagtagtatccccaggtggtgtcgggtttgacatc
aactgtggtgtccgcttgctaagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacattcctgttggggtggggtcaaaaggtgtc
atcccaatgaatgccaaagacttagaggaggccttggagatgggagtggactggtcctta
agagaagggtatgcctgggctgaagacaaggagcactgcgaggagtatggaagaatgctg
caagctgaccccaataaggtttctgcaagggctaagaaaagaggtcttcctcagttgggg
accctgggagcaggcaaccattatgcagaaatccaggttgtggatgagattttcaatgag
tatgctgctaaaaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcgctggtagctatggagaaggcc
atgaagagagacaagattatagtcaatgatcggcagttggcttgtgctcgaatcgcttcc
ccagagggtcaggactatctgaagggaatggcagctgctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggctttcgccaaggtcttcaacacaacccct
gatgacttggacctacacgtgatctatgatgtttctcacaatattgccaaagtggagcag
catgtggtggacggaaaggaacggacactgttagtacacaggaagggatccacccgtgct
ttccctcctcaccatcccctcattgctgttgattaccaactcactggacagccagtgctc
attggtggcaccatgggaacctgtagttatgttcttactggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcgttgtcccgggcaaaatctcga
cgtaatttagatttccaggatgtcttagacaaattggcagacatgggaattgcaatccgt
gttgcctcacccaaactggttatggaagaggctcctgagtcttataagaatgtgacagat
gtggtgaatacctgccatgatgctggaatcagcaagaaagccattaaactgagaccaatt
gctgtgatcaaaggatag
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