Pongo pygmaeus (Bornean orangutan): 129024299
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Entry
129024299 CDS
T10128
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04613
Neutrophil extracellular trap formation
ppyg05014
Amyotrophic lateral sclerosis
ppyg05034
Alcoholism
ppyg05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
129024299 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
129024299 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
129024299 (HDAC6)
09165 Substance dependence
05034 Alcoholism
129024299 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ppyg01009
]
129024299 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129024299 (HDAC6)
04131 Membrane trafficking [BR:
ppyg04131
]
129024299 (HDAC6)
03036 Chromosome and associated proteins [BR:
ppyg03036
]
129024299 (HDAC6)
Enzymes [BR:
ppyg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
129024299 (HDAC6)
Protein phosphatases and associated proteins [BR:
ppyg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129024299 (HDAC6)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
129024299 (HDAC6)
Membrane trafficking [BR:
ppyg04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129024299 (HDAC6)
Chromosome and associated proteins [BR:
ppyg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
129024299 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
129024299
NCBI-ProteinID:
XP_054327213
LinkDB
All DBs
Position
X:49691886..49715138
Genome browser
AA seq
1214 aa
AA seq
DB search
MTSTGQDSTTTRQRRSRQNPQSPPQDSSVTSKRNIKKGAVPRSIPNLAEVKKKGKMKKLG
QAMEEDLIVGLQGMDLNIEAEALAGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLI
QEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNS
YSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQ
KHRIRRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQG
QGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSA
QASVSCALEALEPFWEVLVRSTETVEGDNMEEDNVESEEEGPWEPPALPILTWPVLQSRT
GLVYDQSMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHS
AEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNG
AAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQAISGRALRILIVDWDVHHGNGTQHMFE
DDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHR
LVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGHIILILEGG
YNLTSISESMAACTRSLLGDPPPLLTLPRPPLSGALASITETIQVHRRYWRSLRVMKVED
REGPSSSKLVTKKSPQPAKPRLAERMTTREKKVLEAGMGKVTSASFGEESTPGQTKSETA
VVVLTQDQPSEAATGGATLAQTISEAAIGGAMLGQTTSEEAVGGATPDQTTSEETVGGAT
VDQTTSEDAVGGATLGQTTSEEAVGGATLAQTTSEAAMEGATLDQTTSEEAPGGTELIQT
PLASSTDHQTPPTSPVQGTTPQIFPSTLIGSLRTLELGSESQGASESQAPGEENLLGEAA
GGQDMADSMLMQGSRGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQE
NWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI
AHQNKFGEDMPHPH
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaaccggccaggattccaccacaaccaggcagcgaagaagtaggcagaacccc
cagtcgccccctcaggactccagtgtcacttcgaagcgaaatattaaaaagggagcagtt
ccccgctccatccccaatctagcggaggtaaagaagaaaggcaaaatgaagaagctcggc
caagcaatggaagaagatctaatcgtgggactgcaagggatggatctgaacattgaggct
gaagcactggctggcactggcttggtgttggatgagcagctaaatgaattccattgcctc
tgggatgacagcttcccggaaggccctgagcggctccatgccatcaaggagcaactgatc
caggagggcctcctagatcgctgcgtgtcctttcaggcccggtttgctgaaaaggaagag
ctgatgttggttcacagcctagaatatattgatctgatggaaacaacccagtacatgaat
gagggagaactccgtgtcctagcagacacctacgactcagtttatctgcatccgaactca
tactcctgtgcctgcctggcctcaggctctgtcctcaggctggtggatgcggtcctgggg
gctgagatccggaatggcatggccatcattaggcctcctggacatcatgcccagcacagt
cttatggatggctattgcatgttcaaccacgtggctgtggcagcccgctatgctcaacag
aaacaccgcatccggagggtccttatcgtagattgggatgtgcatcatggtcaaggaaca
cagttcaccttcgaccaggaccccagtgtcctctatttctccatccaccgctacgagcag
ggtaggttctggccccacctgaaggcctctaactggtccaccacaggtttcggccaaggc
caaggatataccatcaatgtgccttggaaccaggtggggatgcgggatgctgactacatt
gctgctttcctgcacgtcctgctgccagtcgccctcgagttccagcctcagctggtcctg
gtggctgctggatttgatgccctgcaaggggatcccaagggtgagatggccgccactccg
gcagggttcgcccagctaacccacttgctcatgggtctggcaggaggcaagctgatcctg
tctctggagggtggctataacctccgcgccctagctgaaggcgtcagtgcttcgctccac
acccttcttggagacccttgccccatgctggagtcacctggtgccccctgccggagtgcc
caggcttcagtttcctgtgctctggaagcccttgagcccttctgggaggttcttgtgaga
tcaactgagaccgtggagggggacaacatggaggaggacaatgtagagagcgaggaggaa
ggaccctgggagccccctgcgctcccaatcctgacatggccagtgctacagtctcgcaca
gggctggtctatgaccaaagtatgatgaatcactgcaacttgtgggacagccaccaccct
gaggtaccccagcgcatcttgcggatcatgtgccgtctggaggagctgggccttgccggg
cgctgcctcaccctgacaccgcgccctgccacagaggctgagctgctcacctgccacagt
gctgagtacgtgggtcatctccgggccacagagaaaatgaaaacccgggagctgcaccgt
gagagttccaactttgactccatctatatctgccccagtaccttcgcctgtgcacagctt
gccactggcgcagcctgccgcctggtagaggctgtgctctcaggagaggttctgaatgga
gctgctgtggtgcgtcccccaggacaccacgcggagcaggatgcagcttgcggtttttgc
tttttcaactctgtggctgtggctgctcgccatgcccaggctatcagtgggcgtgcccta
cgaatcctgattgtggattgggatgtccaccacggtaatggaactcagcacatgtttgag
gatgaccccagtgtgctatatgtgtccctgcaccgctatgatcatggcaccttcttcccc
atgggggatgagggtgccagcagccagatcggccgggctgcgggcacaggcttcaccgtc
aacgtggcatggaacgggccccgcatgggtgacgctgactacctagctgcctggcatcgc
ctggtgcttcccattgcctacgagtttaacccagaactggtgctggtctcagctggcttt
gatgctgcacggggggacccgctggggggctgccaggtgtcacctgagggttatgcccac
ctcacccacctgctgatgggccttgccagtggccacattatccttatcctagagggtggc
tataacctgacatccatctcagagtccatggctgcctgcactcgctccctccttggagac
ccgccacccctgctgaccctgccacggcccccactatcaggggccctggcctcaatcact
gagaccatccaagtccatcgcagatactggcgcagcttacgggtcatgaaggtagaagac
agagagggaccctccagttctaagttggtcaccaagaagtcaccccaaccagccaaacct
aggttagctgagcggatgaccacacgagaaaagaaggttctggaagcaggcatggggaaa
gtcacctcggcatcatttggggaagagtccactccaggccagactaagtcagagacagct
gtggtggtcctcactcaggaccagccctcagaggcagccacagggggagccactctggcc
cagaccatttctgaggcagccattgggggagccatgctgggccagaccacctcagaggag
gctgtcgggggagccactccggaccagaccacctcagaggagactgtgggaggagccact
gtggaccagaccacctcagaggatgctgttgggggagccacgctgggccagactacctca
gaggaggctgtaggaggagctacactggcccagaccacctcggaggcagccatggaggga
gccacactggaccagactacgtcagaggaggctccagggggcaccgagctgatccaaact
cctctagcctcgagcacagaccaccagacccccccaacctcacctgtgcagggaactaca
ccccagatatttcccagtacactgattgggagtctcaggaccttggagctaggcagcgaa
tctcagggggcctcagaatctcaggccccaggagaggagaacctactaggagaggcagct
ggaggtcaggacatggctgattcgatgctgatgcagggatctaggggcctcactgatcag
gccatattttatgctgtgacaccactgccctggtgtccccatttggtggcagtatgcccc
atacctgcagcaggcctagacgtgacccaaccttgtggggactgtggaacaatccaagag
aattgggtgtgtctctcttgctatcaggtctactgtggtcgttacatcaatggccacatg
ctccaacaccatggaaattctggacacccgctggtcctcagctacatcgacctgtcagcc
tggtgttactactgtcaggcctatgtccaccaccaggctctcctagatgtgaagaacatc
gcccaccagaacaagtttggggaggatatgccccacccacactaa
DBGET
integrated database retrieval system
