Pongo pygmaeus (Bornean orangutan): 129025087
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Entry
129025087 CDS
T10128
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04151
PI3K-Akt signaling pathway
ppyg04382
Cornified envelope formation
ppyg04510
Focal adhesion
ppyg04512
ECM-receptor interaction
ppyg04820
Cytoskeleton in muscle cells
ppyg04926
Relaxin signaling pathway
ppyg04933
AGE-RAGE signaling pathway in diabetic complications
ppyg04974
Protein digestion and absorption
ppyg05146
Amoebiasis
ppyg05165
Human papillomavirus infection
ppyg05200
Pathways in cancer
ppyg05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
129025087 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129025087 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129025087 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129025087 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
129025087 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
129025087 (COL4A6)
09158 Development and regeneration
04382 Cornified envelope formation
129025087 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
129025087 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
129025087 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
129025087 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
129025087 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
129025087 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppyg04147
]
129025087 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ppyg00536
]
129025087 (COL4A6)
Exosome [BR:
ppyg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129025087 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ppyg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129025087 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129025087
NCBI-ProteinID:
XP_054328551
LinkDB
All DBs
Position
X:complement(112328934..112605809)
Genome browser
AA seq
1690 aa
AA seq
DB search
MHPGLWLLLVTLCLTEELAGAGEKSYGKPCGGQDCRRSCQCFPEKGARGRPGPIGIQGPT
GPQGFTGSTGLSGLKGERGSPGLLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGPP
GLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLDG
ITGPQGALGSPGAVGPAGPPGLQGPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGP
PPSTGELEFMGFPKGQKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGEKGIPGLPGP
RGPMGSEGVHGPPGQQGKKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNP
GDPGVPGLPGLKGDEGIQGLRGPSGAPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIG
AAGLPGRDGLPGPPGPPGPPSPEFETETLHNKEPGFPGLRGEQGPKGNPGLKGIKGDSGF
CACDGGVPNTGPPGEPGPPGPRGLIGLPGLKGARGDRGSGGAQGPAGAPGLVGPLGPSGP
KGKKGEPILSTIQGMPGDRGDSGSQGFHGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEK
GLPGLPGEKGHPGPPGLPGIGLPGLPGPPGLPGDKGNDGLPGQQGLPGSKGITLPCIIPG
SYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLVHLPELPGFPGPRGEKG
LPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAESGAPGEQGLQGLTGDKGFLGDSGL
PGLKGVHGKPGLLGPKGEQGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGH
PGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGSKGEKGS
VGFVGFPGIPGLPGIPGTRGLKGIPGSAGKMGPSGHAGTPGEKGDRGNPGPVGIPSPRRP
MSNLWLKGDKGSQGSAGSSGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPG
FMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEISGSP
GPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKIGVSGDVGLPGAPGFPGVAGMRGEP
GLQGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSITGVPGPAG
LPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAGQPGDP
GRPGLDGERGRPGPPGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGEL
GLKGMRGEPGFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGPQGAPGQTPTAEAVQVPPGP
LGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGP
PGFEGAPGQQGPFGMPGMPGQSVRVGYTLVKHSQSEQVPLCPIGMSQLWVGYSLLFVEGQ
EKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVSQTQI
PQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSP
GSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGELPVSETLKAGQLHTRV
SRCQVCMKSL
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctgggttgtggctgctcctggttacgttgtgcctgaccgaggaactggcagga
gcgggagagaagtcttatggaaagccatgtgggggccaagactgcagacggagctgtcag
tgttttcctgagaaaggagcgagagggcgacctggaccaattggaattcaaggcccaaca
ggtcctcaaggattcactggctctactggtttatcaggattgaaaggagaaaggggttcc
ccaggccttctcggaccttatggaccaaaaggagataagggtcccatgggagttcctggc
tttcttggcatcaatgggattccgggccatcctggacagccaggccccagaggcccacct
ggtctggatggctgtaatggaactcaaggagctgttggatttccaggccctgatggctat
cctgggcttctcggaccacccgggcttcctggtcagaaaggatcaaaaggtgaccctgtc
cttgctccaggtagtttcaaaggaatgaagggggatcctgggctgcctggactggatgga
atcactggcccacaaggagcactcggatctcctggagctgtaggacctgcaggaccacca
ggattacaaggtcctccagggcctcctggtcctcttggtcctgatgggaatatggggcta
ggttttcaaggagagaaaggagtcaagggggatgttggcctccctggcccagcaggacct
ccaccatctactggagagctggaattcatgggattccccaaagggcagaaaggatccaag
ggtgaaccagggcctaagggttttccaggcataagtggccctccaggcttcccgggcctt
ggaactactggagaaaagggagaaaagggagaaaagggaatccctggtttgccaggacct
aggggtcccatgggttcagaaggagtccatggccctccagggcaacagggcaagaaaggg
accctgggatttcctgggcttaatggattccaaggaattgagggtcaaaagggtgacatt
ggcctgccaggcccagatgttttcatcgatatagatggtgctgtgatctcaggtaatcct
ggagatcctggtgtacctggcctcccaggccttaaaggagatgaaggcatccaaggccta
cgtggcccttctggtgcccctggcttgccagcattatcaggtgtcccaggagccctaggg
cctcagggatttccagggctgaagggggaccaaggaaacccaggccgtaccacaattgga
gcagctggcctccctggcagagatggtttgccaggcccaccaggtccaccaggcccacct
agtccagaatttgagaccgaaactctacacaacaaagagccagggttccctggtctccga
ggagaacaaggtccaaaaggaaacccaggcctcaaaggaataaaaggagactcaggtttc
tgtgcttgtgacggtggtgttcccaacactggaccacccggggaaccaggcccacctggt
ccacggggtctcataggccttccaggccttaaaggagccagaggagatcgaggctctggg
ggtgcacagggcccagcaggggctccaggcttagttgggcctctgggtccttcaggaccc
aaaggaaagaagggggaaccaattctcagtacaattcaaggaatgccaggggatcggggt
gattctggctcccagggcttccatggtgtaataggagaaccaggcaaggacggagtacca
ggtttaccaggtctgccaggccttccgggtgatggtggacagggcttcccaggtgaaaag
gggttacctggacttcctggtgaaaaaggccatcctggtccacctggcctcccaggaatt
gggttaccaggacttcctggaccccctgggcttcctggagataaaggcaatgatggatta
ccaggacaacaaggccttcccggatctaagggaatcactctgccttgtattattcccggg
tcatatggtccatcaggatttccaggcactcccggattcccaggccctaaagggtcccga
ggcctccctgggaccccaggccagcctgggtcaagcggaactaaaggagagccagggagt
ccaggattggttcatcttcctgaattaccaggatttcctggacctcgtggggagaagggc
ttgcctgggtttcctgggctccctggaaaagatggcttgcctgggatgattggcagtcca
ggcttacctggttccaagggagccactggtgacatctttggtgctgaaagtggtgctccg
ggggaacaaggcctacaaggattaacaggggacaaaggatttcttggagactctggcctt
ccgggactcaagggtgtgcacgggaagcctggcttactaggccccaaaggtgagcagggc
agccctgggacaccaggacaggtgggacagccaggcaccccaggatctagtggtccatat
ggcatcaagggcaaatctgggctcccaggagcaccaggcttcccaggcatctcaggacat
cctggaaagaaaggaacaagaggcaagaaaggtcctcctggatcaattgtaaagaaaggg
ctgccagggttaaaaggccttcctggaaatccaggcctagtaggactgaaaggaagccca
ggctctccaggggtcgctgggttgccagccctctctggatccaagggagagaaggggtct
gttggattcgtaggttttccaggaataccaggtctgcctggtattcctgggacaagagga
ttaaagggaattccgggatcagctggaaaaatgggaccatctggacacgctggtactcct
ggtgaaaagggagacagaggcaatccggggccagtcggaatacctagtccaagacgtcca
atgtcaaacctttggctcaaaggagacaaaggctctcaaggctcagccggatccagtgga
tttcctgggccaagaggtgacaaaggagaggctggtcgacctgggccaccaggcctgcct
ggagctcctggcctcccaggcattatcaaaggagttagtggaaagccagggccccctggc
ttcatgggaatccggggcttacctggcctgaaggggtcctctgggatcacaggtttccca
ggaatgccaggagaaagtggttcacaaggtatcagagggtcgcctggactcccaggagca
tctggtctcccaggcctgaaaggagacaacggccagacagttgaaatttccggtagccca
ggacccaagggacagcctggtgaatctggttttaaaggtacaaaaggaagagatggacta
ataggcaatataggcttccctggaaacaaaggtgaagatggaaaaattggtgtttccgga
gatgttggccttcctggagctccaggatttccaggagttgccggcatgagaggagaacca
ggacttcaaggttcttctggtcatcaaggggcaattgggcccctaggatcccccggatta
ataggacccaaaggcttccctggatttcctggtttacatggactgaatgggcttccgggc
accaagggtacccatggcactccaggacctagtatcaccggtgtgcccgggcctgctggt
ctccctggacccaaaggagaaaaaggatatccaggaattggcatcggagctccagggaag
ccgggcctgagagggcaaaaaggtgatcgaggtttcccaggtctccagggccctgctggt
ctccccggtgccccaggcatctccttgccttcactcatagcaggacagcctggtgacccc
gggcgaccaggcctagatggagaacgaggccgcccaggcccccctggacccccaggtccc
cctgggccatcctcgaatcaaggcgacaccggagaccctggcttccctggaattcctgga
cctaaagggcctaagggagaccaaggaattccaggtttttctggcctccctggagagcta
ggactgaaaggcatgagaggtgagcctggcttcatggggactccaggcaaggttgggcca
cctggagacccaggatttcccggaatgaaggggaaggcagggccaagaggctcttctggc
ccccaaggtgctcctggacaaacaccaactgcagaagctgtccaggttcctcctggaccc
ttgggtctaccagggatcgatggcatccctggcctcactggggaccctggggctcaaggc
cctgtaggcctacaaggctccaaaggtttacctggcatccccggtaaagatggccccagt
gggctcccgggcccacctggggctcttggtgatcctggtctgcctggactgcaaggccct
ccaggatttgaaggagctccaggacagcaaggccccttcgggatgcctggaatgcctggc
cagagcgtgagagtgggctacacgttggtaaagcacagccagtcggaacaggtgcccctg
tgtcccatcgggatgagccagctgtgggtggggtacagcttactgtttgtggagggacaa
gagaaagcccacaaccaggacctgggctttgctggctcctgtctgccccgcttcagcacc
atgccgttcatctactgcaacatcaacgaggtgtgccactatgccaggcgcaatgataaa
tcttactggctctccactaccgcccctatccccatgatgcccgtcagccagacccagatt
ccccagtacatcagccgctgctctgtgtgtgaggcaccctcgcaagccattgctgtgcac
agccaggacatcaccatcccacagtgccccctgggctggcgcagcctctggattgggtac
tccttcctcatgcacactgccgctggtgctgagggtggaggccagtccctggtctcacct
ggctcctgcctagaggactttcgggccactcctttcatcgagtgcagtggcgcccgaggc
acctgccactactttgcaaacaagtacagtttctggttgaccacagtggaggagaggcag
cagtttggggagttgcctgtgtctgaaacgctgaaagctgggcagctccacactcgagtc
agtcgctgccaggtgtgtatgaaaagcctgtag
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