Pongo pygmaeus (Bornean orangutan): 129031534
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Entry
129031534 CDS
T10128
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
129031534 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ppyg04040
]
129031534 (SCN1A)
Ion channels [BR:
ppyg04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129031534 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Neur_chan_memb
New_glue
ATP-synt_B
PFF1_TM
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
129031534
NCBI-ProteinID:
XP_054334088
LinkDB
All DBs
Position
11:complement(65534488..65676971)
Genome browser
AA seq
1866 aa
AA seq
DB search
MLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWN
WLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGNLRNKCIQWPPTNASLEEHSIEKNITVNYNGTLINETVFE
FDWKSYIQDSRYHYFLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNYGYTSFDTFSWA
FLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQ
ATLEEAEQKEAEFQQMIEQLRKQQEAAQAATATASEHSREPSAAGRLSDSSSEASKLSSK
SAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDSIRRKGFRFSIEGNRLTYEKRYSSP
HQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPR
RHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEGT
TTETEMRKRRSSSFHISMDFLEDPSQRQRAMSIASILTNTVEELEESRQKCPPCWYKFSN
IFLIWDCSPYWLKVKHVVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMTDHFNNVLTVG
NLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLANVEGLSVLRSFRL
LRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKI
ASDCQLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLTVFMMVMVIGNLVV
LNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHKGVAYVKRKIYEFIQQSFVRKQK
ILDEIKPLDDLNNKKNSCMSNHTTEIGKDLDYLKDVNGTTSGIGTGSSVEKYIIDESDYM
SFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEESKEKLNESSSSSEGSTVDIGAPA
EEQPVVEPEETLEPEACFTEGCVQRFKCCQINVEEGRGKQWWNLRRTCFRIVEHNWFETF
IVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTYFTNA
WCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGA
IPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTTTGDRFDIEDVNNHTDCLKLIERN
ETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYF
VIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPI
PRPGNKFQAMVFDFVTRQVFDISIMILICLNMVTMMVETDDQSEYVTTILSRINLVFIVL
FTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARI
GRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDD
MFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPNKVNPGSSVKGDCGNPSVGI
FFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFM
EFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMD
ALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAVIIQRAYRRHLLKRTVKQASFTYN
KNKIKGGANLLIKEDMIIDRINENSITEKTDLTMSTAVCPPSYDRVTKPIVEKHEQEGKD
EKAKGK
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atgctaattatgtgcactattttgacaaattgtgtgtttatgacaatgagtaaccctcct
gattggacaaagaatgtagaatacaccttcacaggaatatatacttttgaatcacttata
aaaattattgcaaggggattctgtttagaagattttactttccttcgggatccatggaac
tggctcgatttcactgtcattacttttgcgtacgtcacagagtttgtggacctgggcaat
gtctcggcattgagaacattcagagttctccgagcattgaagacgatttcagtcattcca
ggcctgaaaaccattgtgggagccctgatccagtctgtgaagaagctctcagatgtaatg
atcctgactgtgttctgtctgagcgtatttgctctaattgggctgcagctgttcatgggc
aacctgaggaataaatgtatacaatggcctcccaccaatgcttccttggaggaacatagt
atagaaaagaatataactgtgaattacaatggtacacttataaatgaaactgtctttgag
tttgactggaagtcatatattcaagattcaagatatcattatttcctggagggtttttta
gatgcactactatgtggaaatagctctgatgcaggccaatgtccagagggatatatgtgt
gtgaaagctggtagaaatcccaattatggctacacaagctttgataccttcagttgggct
tttttgtccttgtttcgactaatgactcaggacttctgggaaaatctttatcaactgaca
ttacgtgctgctgggaaaacgtacatgatattttttgtgttggtcattttcttgggctca
ttctacctaataaatttgatcctggctgtggtggccatggcctacgaggaacagaatcag
gccaccttggaagaagcagaacagaaagaggccgaatttcagcagatgatcgaacagctt
agaaagcaacaggaggcagctcaggcagcaacggcaactgcctcagaacattccagagag
cccagtgcagcaggcaggctctcagacagctcatctgaagcctctaagttgagttccaag
agtgctaaggaaagaagaaatcggaggaagaaaagaaaacagaaagagcagtctggtggg
gaagagaaagatgaggatgaattccaaaaatctgaatctgaggacagcatcaggaggaaa
ggttttcgcttctccattgaagggaaccgattgacatatgaaaagaggtactcttcccca
caccagtctttgctgagcatccgtggctccctattttcaccaaggcgaaatagcagaaca
agccttttcagctttagagggcgagcaaaggatgtgggatctgagaacgacttcgcagat
gatgagcacagtacctttgaggataacgagagccgtagagattccttgtttgtgccccga
cgacatggagagagacgcaacagcaacctgagtcagaccagtaggtcatcccggatgctg
gcagtgtttccagcgaatgggaagatgcacagcactgtggattgcaatggtgtggtttcc
ttggttggtggaccttcagttcctacatcgcctgttggacagcttctgccagagggaaca
accactgaaactgaaatgagaaagagaaggtcaagttctttccacatttccatggacttt
ctagaagatccttcccaaaggcaacgagcaatgagtatagccagcattctaacaaataca
gtagaagaacttgaagaatccaggcagaaatgcccaccctgttggtataaattttccaac
atattcttaatctgggactgttctccatattggttaaaagtgaaacatgttgtcaacctg
gtcgtgatggacccatttgttgacctggctatcaccatctgtattgtcttaaatactctt
ttcatggccatggagcactatccaatgacagaccatttcaataatgtgcttacagtagga
aacttggttttcactgggatctttacagcagaaatgtttctgaaaattattgccatggac
ccttactattatttccaagaaggctggaatatctttgatggttttattgtgacgcttagc
ctggtagaacttggactcgccaatgtggaaggattatctgttctccgttcatttcgattg
ctgcgagttttcaagttggcaaaatcttggccaacattaaatatgctaataaagatcatc
ggcaattccgtgggggctctgggaaatttaacccttgtcttggctatcatcgtcttcatt
tttgccgtggtcggcatgcagctctttggtaaaagctacaaagattgtgtctgcaagatc
gccagtgattgtcaactcccacgctggcacatgaatgacttcttccactccttcctgatc
gtgttccgcgtgctgtgtggggagtggatagaaaccatgtgggactgtatggaggttgct
ggtcaagccatgtgccttactgtcttcatgatggtcatggtgattggaaacctagtggtc
ctgaatctctttctggccttgcttctgagctcatttagtgcagacaaccttgcagccact
gatgatgataatgaaatgaataatctccaaattgctgtggataggatgcacaaaggagta
gcttatgtgaaaagaaaaatatatgaatttattcaacagtccttcgttaggaaacaaaag
attttagatgaaattaagccacttgatgatctaaacaacaagaaaaacagttgtatgtcc
aatcatacaacagaaattgggaaagatcttgactatcttaaagatgtaaatggaactaca
agtggtataggaactggcagcagtgttgaaaaatacattattgatgaaagtgattacatg
tcattcataaacaatcctagtcttactgtgactgtaccaattgctgtaggagaatctgac
tttgaaaatttaaacacggaagactttagtagtgaatcggatctggaagaaagcaaagag
aaactgaatgaaagcagtagctcatcagaaggtagcactgtggacatcggcgcacctgca
gaagaacagcccgtagtggaacctgaagaaacccttgaaccggaagcttgtttcactgaa
ggctgtgtacaaagattcaagtgttgtcaaatcaatgtggaagaaggcagaggaaaacaa
tggtggaacctgagaaggacgtgtttccgaatagttgaacataactggtttgagaccttc
attgttttcatgattctccttagtagtggtgctctggcatttgaagatatatatattgat
cagcgaaagacgattaagacgatgttggaatatgctgacaaggttttcacttacattttc
attctggaaatgcttctaaaatgggtggcatatggctatcaaacatatttcaccaatgcc
tggtgttggctggacttcttaattgttgatgtttcattggtcagtttaacagcaaatgcc
ttgggttactcagaacttggagccatcaaatctctcaggacactaagagctctgagacct
ctaagagccttatctcgatttgaagggatgagggtggttgtgaatgcccttttaggagca
attccatccatcatgaatgtgcttctggtttgtcttatattctggctaattttcagcatc
atgggcgtaaatttgtttgctggcaaattctaccactgtattaataccacaactggtgac
aggtttgacatcgaagacgtgaataatcatactgattgcctaaaactaatagaaagaaat
gagactgctcgatggaaaaatgtgaaagtaaactttgataatgtaggatttgggtatctc
tctttgcttcaagttgccacattcaaaggatggatggatataatgtatgcagcagttgat
tccagaaatgtggaactccagcctaagtatgaagaaagtctgtacatgtatctttacttt
gttattttcatcatctttgggtccttcttcaccttgaacctgtttattggtgtcatcata
gataatttcaaccagcagaaaaagaagtttggaggtcaagacatctttatgacagaagaa
cagaagaaatactataatgcaatgaaaaaattaggatcgaaaaaaccgcaaaagcctata
cctcgaccaggaaacaaatttcaagcaatggtctttgacttcgtaaccagacaagttttt
gacataagcatcatgattctcatctgtcttaacatggtcacaatgatggtggaaacagat
gaccagagtgaatatgtgactaccattttgtcacgaatcaatctggtgttcattgtgctg
tttactggagagtgtgtactgaaactcatctctctacgccattattattttaccattggc
tggaatatttttgattttgtggttgtcattctctccattgtaggtatgtttcttgccgag
ctgatagaaaagtatttcgtgtcccctaccctgttccgagtgatccgtcttgctaggatt
ggccgaatcctacgtctgatcaaaggagcaaaggggatccgcacgctgctctttgctttg
atgatgtcccttcctgcgttgtttaacatcggcctcctgctcttcctggtcatgttcatc
tacgccatctttgggatgtccaactttgcctatgttaagagggaagttgggatcgatgac
atgttcaactttgagacctttggcaacagcatgatctgcctgttccaaattacaacctct
gctggctgggatggattgttagcacccattctcaacagtaagccacccgactgtgaccct
aataaagttaaccctggaagctcagttaagggagattgtgggaacccatctgttggaatt
ttcttttttgtcagttacatcatcatatccttcctggttgtggtgaacatgtacatcgcg
gtcatcctggagaacttcagtgttgctactgaagaaagtgcagagcctctgagtgaggat
gactttgagatgttctatgaggtttgggagaagtttgatcccgatgcaactcagttcatg
gaatttgaaaaattatctcagtttgcagctgcgcttgaaccgcctctcaatctgccgcaa
ccaaacaaactccagctcattgccatggatttgcccatggtgagtggtgaccggatccac
tgtcttgatatcttatttgcttttacaaagcgggttctaggagagagtggagagatggat
gctctacgaatacagatggaagagcgattcatggcttccaatccttccaaggtctcctat
cagccaatcactactactttaaaacgaaaacaagaggaagtatctgctgttattattcag
cgtgcttacagacgccaccttttaaagcgaactgtaaaacaagcttcctttacgtacaat
aaaaacaaaatcaaaggtggggctaatcttcttataaaagaagacatgataattgacaga
ataaatgaaaactctattacagaaaaaactgatctgaccatgtccactgcagtttgtcca
ccttcctatgaccgggtgacaaagccaattgtggaaaaacatgagcaagaaggcaaagat
gaaaaagccaaagggaaataa
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