Pongo pygmaeus (Bornean orangutan): 129031667
Help
Entry
129031667 CDS
T10128
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129031667 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129031667 (BARD1)
04121 Ubiquitin system [BR:
ppyg04121
]
129031667 (BARD1)
03036 Chromosome and associated proteins [BR:
ppyg03036
]
129031667 (BARD1)
03400 DNA repair and recombination proteins [BR:
ppyg03400
]
129031667 (BARD1)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
129031667 (BARD1)
Ubiquitin system [BR:
ppyg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
129031667 (BARD1)
Chromosome and associated proteins [BR:
ppyg03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
129031667 (BARD1)
DNA repair and recombination proteins [BR:
ppyg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
129031667 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_2
Ank_4
Ank
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
zf-C3HC4
Ank_KRIT1
zf-C3HC4_2
Siva
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
129031667
NCBI-ProteinID:
XP_054334195
LinkDB
All DBs
Position
11:complement(115156685..115245240)
Genome browser
AA seq
783 aa
AA seq
DB search
MPDNRQPRNRQPRIRSGNEPRSAPAMEPDGRGAWAHSRAALDRLEKLLRCSRCANILREP
VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDVKINRQLDSMIQLCSKLRNLLYDNKL
SDLKEDKDRKEDKDRKSLFNDAENKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDAS
APHDSYEFVSPSPPADVSERAKKASARSRKKQKKKTLAEINKKWNLEAEKEDSEFDSKEE
SKQKLVSFCSQPSIISSPQINGEIDLLASGSLTESECFGSLTDVSLPLAEQIESPDTKSR
NELVTPEKVCKNYLTSKKSLPLENNGKRGHQNRLPSPISKRCRTSILSTSGDFVKQTVPS
ENTPLPECSSPPSCKHKVGGTSERKNSNMSDEFISLSPGTPPSTLNSSSYRRVMSSPSVM
KLLPNMAVKRNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL
KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHMDIVKLLLSYGASRNAVNIFGLRPVDYT
DDESMKSLLLLPEKDESSSTGHCSVMNTGQRRDGPLVLIGSGLSSEQQKMLSELAAILKA
KKCAEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIP
EGPRRSRLNREQLLPKLFDGCYFYLGGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVT
QTINTVAYHARPDSDQRFCTQYIIYEDLSNYHPERVRQGKVWKAPSSWFIDCVMSFELLP
LDS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgccggataatcggcagccgaggaaccggcagccgaggatccgctccgggaacgagcct
cgttccgcgcccgccatggaaccggatggtcgcggtgcctgggcccacagtcgcgccgcg
ctcgaccgcctggagaagctgctgcgctgctcgcgttgtgctaacattctgagagagcct
gtgtgtttaggaggatgtgagcacatcttctgtagtaattgtgtaagtgactgcattgga
actggatgtccagtatgttacaccccggcctggatacaagacgtgaagataaatagacaa
ctggacagcatgattcaactttgtagtaagcttcgaaatttgctatatgacaataagctc
tcagatttaaaagaagataaagataggaaagaagataaagataggaaaagtttgtttaat
gatgcagaaaacaagaagaattcaattaaaatgtggtttagccctcgaagtaagaaagtc
agatatgttgtgagtaaagcttcagtacaaacccagcctgcaataaaaaaagatgcaagt
gctccgcacgactcatatgaatttgtttccccaagtcctcctgcagatgtttctgagagg
gctaaaaaggcttctgcaagatctcgaaaaaagcaaaaaaagaaaactttagctgaaatc
aacaaaaaatggaatttagaggcagaaaaagaagacagtgaatttgactccaaagaggaa
tctaagcaaaagctggtatccttctgtagccaaccatccattatctccagtcctcagata
aatggtgaaatagacttactagcaagtggctccttgacagaatctgaatgttttggaagt
ttaactgacgtctctttaccattggctgagcaaatagagtctccagacactaagagcagg
aatgaactagtgactcctgagaaggtctgcaaaaattatcttacatctaagaaatctttg
ccattagaaaataatggaaaacgtggccatcagaatagacttcccagtcccatttctaag
agatgtagaaccagcattctgagcaccagtggagattttgttaagcaaacggtgccctca
gaaaatacaccattgcctgaatgttcttcaccaccttcatgcaaacataaagttggtggt
acatcagagaggaaaaacagtaacatgtctgatgaattcattagtctttcaccaggtaca
ccaccttctacattaaatagttcaagttacaggcgagtgatgtctagtccctcagtaatg
aagctgttgcccaatatggctgtgaaaagaaatcatagaggagagactttgctccatatt
gcttctattaagggcgacataccttctgttgaataccttttacaaaatggaagtgatcca
aatgttaaagaccatgctggatggacaccattgcatgaagcttgcaatcatgggcacctg
aaggtagtggaattattgctccagcataaggcattggtgaacaccaccgggtatcaaaat
gactcaccacttcacgatgcagctaagaatgggcacatggatatagtcaagctgttactt
tcctatggagcctccagaaatgctgttaacatatttggtctgcggcctgtggattataca
gacgatgaaagtatgaaatcgctattgctgctaccagagaaggatgagtcatcctcaact
ggccattgctcggtaatgaacactgggcagcgtagggatggacctcttgtacttataggc
agtgggctctcttcagaacaacagaaaatgctcagtgagcttgcagcaattcttaaggct
aaaaagtgtgctgagtttgacagtacagtaactcatgttgttgttcctggggatgcagtt
caaagtaccttgaagtgtatgcttgggattctcaatggatgctggattctaaaatttgaa
tgggtaaaagcatgtctacgaagaaaagtatgtgaacaggaagaaaagtatgaaattcct
gaaggtccgcgcagaagcaggctcaacagagaacagctgttgccaaagctgtttgatgga
tgctacttctatttggggggaaccttcaaacaccatccaaaggacaaccttattaagctc
gtcactgcaggtgggggccagatcctcagtagaaagcccaagccagacagtgacgtgact
cagaccatcaatacagtcgcataccatgcgagacccgattctgatcagcgcttctgcaca
cagtatatcatctatgaagatttgtctaattatcacccagagagggttcggcagggcaaa
gtctggaaggctccttcgagctggtttatagactgtgtgatgtcctttgagttgcttcct
cttgacagctga
DBGET
integrated database retrieval system
