Pongo pygmaeus (Bornean orangutan): 129031737
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Entry
129031737 CDS
T10128
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129031737 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppyg03041
]
129031737 (SF3B1)
03036 Chromosome and associated proteins [BR:
ppyg03036
]
129031737 (SF3B1)
Spliceosome [BR:
ppyg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129031737 (SF3B1)
Complex B
129031737 (SF3B1)
Complex C
U2 SnRNP specific factors
129031737 (SF3B1)
Chromosome and associated proteins [BR:
ppyg03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
129031737 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
DUF2298
Motif
Other DBs
NCBI-GeneID:
129031737
NCBI-ProteinID:
XP_054334339
LinkDB
All DBs
Position
11:complement(97405045..97451137)
Genome browser
AA seq
1459 aa
AA seq
DB search
MGGVSGSCSVARSGGLSTVARHDYGSRLPRTPGLKRCSRLSLQSCWDSVSVLNSPRRIHF
PPGQSYSLKDLTARLGDFLGHHAGGFRAQPCLLPHPQCTSRFPLGGSSVTCHPTERAPVS
RTRRVQPPPLFFSVAAATSGSSWERQFRLCVRVDKMAKIAKTHEDIEAQIREIQGKKAAL
DEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYH
APVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDP
KMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTAD
QTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGA
ATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGE
TPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQA
WRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFH
MQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIK
NGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDD
LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVR
NTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRS
LVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAA
FLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANY
IKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYR
KMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRV
KPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEE
YPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR
GAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE
RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY
IYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPH
VIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYP
RIYNDDKNTYIRYELDYIL
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgggaggggtctcggggtcttgctctgtcgcccggtcgggaggcttgagtacagtggcg
cgacacgattacggctcacggctgcctcgaactcctgggctcaagcgatgctcccgcctc
agcctccagagttgctgggactcagtgtctgttcttaactcccctcgtagaatccacttt
cctccagggcaaagttactcacttaaggaccttacggctcggctcggggatttcctgggt
caccacgcaggcggcttcagggcccaaccgtgtctcctcccccacccacaatgcacctcg
cggttccctctaggtggcagctctgtcacgtgtcacccgacggagcgcgctcctgtttcg
cgcacgcgcagagtgcagccccccccgctatttttctccgtggcggcggcgacgagcgga
agttcttgggagcgccagttccgtctgtgtgttcgagtggacaaaatggcgaagatcgcc
aagactcacgaagatattgaagcacagattcgagaaattcaaggcaagaaggcagctctt
gatgaagctcaaggagtgggcctcgattctacaggttattatgaccaggaaatttatggt
ggaagtgacagcagatttgctggatatgtgacatcaattgctgcaactgaacttgaagat
gatgacgatgactattcatcatctacgagtttgcttggtcagaagaagccaggatatcat
gcccctgtggcattgcttaatgatataccacagtcaacagaacagtatgatccatttgct
gagcaccgacctccaaagattgcagaccgggaagatgaatacaaaaagcataggcggacc
atgataatttccccagagcgtcttgatccttttgcagatggagggaagacccctgatcct
aaaatgaatgctaggacttacatggatgtaatgcgagaacaacacttgactaaagaagaa
cgagaaattaggcaacagctagcagaaaaagctaaagctggagaactaaaagtcgtcaat
ggagcagcagcgtcccagcctccatcaaaacgaaaacggcgttgggatcaaacagctgat
cagactcctggtgccactcccaaaaaactatcaagttgggatcaggcagagacccctggg
catactccttccttaagatgggatgagacaccaggtcgtgcaaagggaagtgagactcct
ggagcaaccccaggctcaaaaatatgggatcctacacctagccacacaccagcgggagct
gctactcctggacgaggcgatacaccaggccatgcgacaccaggccatggaggcgcaact
tccagtgctcgtaaaaacagatgggatgaaacccccaaaacggagagagatactcctggg
catggaagtggatgggctgagactcctcgaacagatcgaggtggagattctattggtgaa
acaccgactcctggagccagtaaaagaaaatcacggtgggatgaaacaccagctagtcag
atgggtggaagcactccagttctgacccctggaaagacaccaattggcacaccagccatg
aacatggctacccctactccaggtcacataatgagtatgactcctgaacagcttcaggct
tggcggtgggaaagagaaattgatgagagaaatcgcccactttccgatgaggaattagat
gctatgttcccagaaggatataaggtacttcctcctccagctggttatgttcctattcga
actccagctcgaaagctgacagctactccaacacctttgggtggtatgactggtttccac
atgcaaactgaagatcgaactatgaaaagtgttaatgaccagccatctggaaatcttcca
tttttaaaacctgatgatattcagtactttgataaactattggttgatgttgatgaatca
acacttagtccagaagagcaaaaagagagaaaaataatgaagttgcttttaaaaattaag
aatggaacaccaccaatgagaaaggctgcattgcgtcagattactgataaagctcgtgaa
tttggagctggtcctttgtttaatcagattcttcctttactgatgtctcctacacttgag
gatcaagagcgtcatttacttgtgaaagttattgataggatactgtacaaacttgatgac
ttagttcgtccatatgtgcataagatccttgtggtcattgaaccgctattgattgatgaa
gattactatgctagagtggaaggtcgagagatcatttctaatttggcaaaggctgctggt
ctggctactatgatctctaccatgagacctgatatagataacatggatgagtatgtccgt
aacacaacagctagagcttttgctgttgtagcctctgccctgggcattccttctttattg
cccttcttaaaagctgtgtgcaaaagcaagaagtcctggcaagcgagacacactggtatt
aagattgtacaacagatagctattcttatgggctgtgccatcttgccacatcttagaagt
ttagttgaaatcattgaacatggtcttgtggatgagcagcagaaagttcggaccatcagt
gctttggccattgctgccttggctgaagcagcaactccttatggtatcgaatcttttgat
tctgtgttaaagcctttatggaagggtatccgccaacacagaggaaagggtttggctgct
ttcttgaaggctattgggtatcttattcctcttatggatgcagaatatgccaactactat
actagagaagtgatgttaatccttattcgagaattccaatctcctgatgaggaaatgaag
aaaattgtgctgaaggtggtaaaacagtgttgtgggacagatggtgtagaagcaaactac
attaaaacagagattcttcctcccttttttaaacacttctggcagcacaggatggctttg
gatagaagaaattaccgacagttagttgatactactgtggagttggcgaacaaagtaggt
gcagcagaaattatatccaggattgtggatgatctgaaagatgaagctgaacagtacaga
aaaatggtgatggagacaattgagaaaattatgggcaatttgggagcagcagatattgat
cataaacttgaagaacaactgattgatggtattctttatgctttccaagaacagactaca
gaggactcagtaatgttgaacggctttggcacagtggttaatgctcttggtaaacgagtc
aaaccatacttgcctcagatctgtggtacagttttgtggcgtttaaataacaaatctgca
aaagttaggcaacaggcagctgacttgatttctcgaactgctgttgtcatgaagacttgt
caagaggaaaaattgatgggacacttgggtgttgtattgtatgagtatttgggtgaagag
taccctgaagtattgggcagcattcttggagcactgaaggccattgtaaatgtcataggt
atgcataagatgactccaccaattaaagatctgctgcctagactcacccccatcttaaag
aacagacatgaaaaagtacaagagaattgtattgatcttgttggtcgtattgccgacagg
ggagctgaatatgtatctgcaagagaatggatgaggatttgctttgagcttttagagctc
ttaaaagcccacaaaaaggctattcgtagagccacagtcaacacatttggttatattgca
aaggccattggccctcatgatgtattggctacacttctaaacaacctcaaagttcaagaa
aggcagaacagagtttgtaccactgtagcaatagctattgttgcagaaacatgttcaccc
ttcacagtactccctgccttaatgaatgaatacagagttcctgaactgaatgttcaaaat
ggagtgttaaaatcgctttccttcttgtttgaatatattggtgaaatgggaaaagactac
atttatgccgtaacaccgttacttgaagatgctttaatggatagagaccttgtacacaga
cagacggctagtgcagtggtacagcacatgtcacttggggtttatggatttggttgtgaa
gattcgctgaatcacttgttgaactatgtatggcccaatgtgtttgagacatctcctcat
gtaattcaggcagttatgggagccctagagggcctgagagttgctattggaccatgtaga
atgttgcaatattgtttacagggtctgtttcacccagcccggaaagtcagagatgtatat
tggaaaatttacaactccatctacattggttcccaggacgctctcatagcacattaccca
agaatctacaacgatgataagaacacctatattcgttatgaactcgactatatcttataa
DBGET
integrated database retrieval system
