Pongo pygmaeus (Bornean orangutan): 129032459
Help
Entry
129032459 CDS
T10128
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129032459 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129032459 (SMG5)
03032 DNA replication proteins [BR:
ppyg03032
]
129032459 (SMG5)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129032459 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
129032459 (SMG5)
DNA replication proteins [BR:
ppyg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129032459 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
SPAR
Motif
Other DBs
NCBI-GeneID:
129032459
NCBI-ProteinID:
XP_054335626
LinkDB
All DBs
Position
1:94088070..94124051
Genome browser
AA seq
1016 aa
AA seq
DB search
MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKRCKDIKRLLVNFMYLQSLLQP
KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
ICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PESKEPLEKEEEPDPEPPPIAPQVGEGRKSRKFSRLSCLRRRRHPPKVGDDSDLSEGFES
DSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEEEEGTRSPTLE
PPRGRSEAPDSLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTDPHT
SASHRPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKV
FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGCELP
DLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRPLLSTLEESVVRICCIRSFGHFIARLQ
GSILQFNPEVGIFISIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHP
GARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQG
AGEEDPSGMVTIITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcccccccacaggggagagcagcgagcccgaagcaaaagtcctccacact
aagcggctttaccgggctgtggtggaggctgtgcatcgacttgacctcatcctttgcaac
aaaactgcttatcaagaagtattcaaaccagaaaacattagcctgaggaacaagctgcgt
gagctctgcgtcaagcttatgttcctgcacccagtggactatgggagaaaggctgaggag
ctgctgtggagaaaggtatactatgaagttatccagcttatcaagactaacaaaaagcac
atccacagccggagcactttggaatgtgcctacaggacgcacctggttgctggtattggc
ttctaccagcatctccttctctatatccagtcccactaccagctggaactgcagtgctgc
atcgactggacccatgtcactgaccccctcataggatgcaagaagccagtgtctgcctca
gggaaggagatggattgggcacagatggcatgtcaccgatgtctagtgtacctgggggat
ttgtcccgatatcagaatgaattagctggcgtagataccgagctgctagccgagagattt
tactaccaagccctgtcagtagctcctcagattggaatgcccttcaatcagctgggcacc
ctggcaggcagcaagtactataatgtggaagccatgtattgctacctgcgctgcatccag
tcagaagtatcctttgagggagcctatgggaacctcaagcggctgtatgacaaggcagcc
aaaatgtaccaccaactgaagaagtgtgagactcggaaactgtctcctggcaaaaagcga
tgtaaagacattaaaaggttgctagtgaactttatgtatctgcaaagcctcctacagccc
aaaagcagctccgtggactcagagctgacctcactttgccagtcagtcctggaggacttc
aacctctgcctcttctacctgccctcctcacccaacctcagcctggccagtgaggatgag
gaggagtatgagagtggatatgctttcctcccggatcttctcatctttcaaatggtcatc
atctgccttatgtgtgtgcacagcttggagagagcaggatccaagcagtacagtgcagcc
attgccttcaccctggccctcttttcccatctcgtcaatcatgtcaacatacggctgcag
gctgagctggaagagggcgagaatcccgtcccggcattccagagtgatggcacagatgaa
ccagagtccaaggaacctctggagaaagaggaggagccagatcctgagcctcctcctata
gcaccccaagtgggtgagggcagaaagagccgtaagttctctcgcctctcctgtctccgc
cgtcgccgccacccacccaaagttggtgatgacagtgacctgagtgaaggctttgaatcg
gactcaagccatgactcagcccgggccagtgagggctcagacagtggctctgacaagagt
cttgaaggtgggggaacggcctttgatgctgaaacagactcggaaatgaatagccaggag
tcccgatcagacttggaagatatggaggaagaggaggggacacggtcaccaaccctggag
ccccctcggggcagatcagaggctcctgattccctcaatggccccctgggccccagtgag
gctagcattgccagcaatctacaagccatgtccacccagatgttccagactaagcgctgc
ttccgactggcccccacctttagcaacctgctcctccagcccaccaccgaccctcatacc
tcggccagccacaggccttgtgtcaatggggatgtggacaagccgtcagagccagcctct
gaggagggctctgagtcggaggggagtgagtccagtggacgctcctgtcggaatgagcgc
agcatccaggagaagcttcaggtcctgatggctgaaggtctgcttcctgctgtgaaagtc
ttcctggactggcttcggaccaaccccgacctcatcatcgtgtgtgcgcagagctctcaa
agtctgtggaaccgcctgtctgtgttgctgaatctgttgcctgctgctggtgaactccag
gagtctggcctggccttgtgtcctgaggtccaagatcttcttgaaggttgtgaactgcct
gacctcccctctagccttctgctcccggaggacatggctcttcgtaacctgcccccgctc
cgagctgcccacagacgctttaactttgacacggatcggcccctgctcagcaccttagag
gagtcagtggtgcgcatctgctgcatccgcagctttggtcatttcatcgcccgcctgcaa
ggcagcatcctgcagttcaacccagaggttggcatcttcatcagcattgcccagtctgag
caggagagcctgctgcagcaggcccaggcacagttccgaatggcacaggaggaagctcgt
cggaacaggctcatgagagacatggctcagctacgacttcagctcgaagtgtctcagctg
gagggcagcctgcagcagcccaaggcccagtcagccatgtctccctacctcgtccctgac
acccaggccctctgccaccatctccctgtcatccgccaactggccaccagtggccgcttc
attgtcatcatcccaaggacagtgatcgatggcctggatttgctgaagaaggaacaccca
ggggcccgggatgggattcggtacctggaggcagagtttaaaaaaggaaacaggtacatt
cgctgccagaaagaggtgggaaagagctttgagcggcataagctgaagaggcaggatgca
gatgcctggactctctataagatcctagacagctgcaaacagctgactctggcccagggg
gcaggtgaggaggatccgagcggcatggtgaccatcatcacaggccttccactggacaac
cccagcgtgctttcaggccccatgcaggcagccctgcaggccgctgcccacgccagcgtg
gacatcaagaatgttctggacttctacaagcagtggaaggaaattggttga
DBGET
integrated database retrieval system
