Pongo pygmaeus (Bornean orangutan): 129032489
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Entry
129032489 CDS
T10128
Symbol
EXOSC7
Name
(RefSeq) exosome complex component RRP42 isoform X1
KO
K12589
exosome complex component RRP42
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129032489 (EXOSC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129032489 (EXOSC7)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129032489 (EXOSC7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
129032489 (EXOSC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
129032489
NCBI-ProteinID:
XP_054335708
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Position
2:complement(108638839..108674015)
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AA seq
291 aa
AA seq
DB search
MASVALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILV
GVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVD
LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI
ELSDDPYDCIRLSVENIPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMR
KVGKGSLDPESIFEMMETGKRVGKVLHASLQSVLHKEESLGPKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtggcgctgagcgaggcagagaaggtgtacatcgtgcacggcgtccaggaa
gacctccgtgtggatggccgtggctgtgaggactaccgatgtgttgaagtggaaaccgat
gtggtgtccaacaccagtgggtctgccagggtcaagctgggtcacacagacatcttggtg
ggagtaaaagcagaaatggggacaccgaagctggagaaaccaaatgaaggctacttggag
ttctttgttgactgttcagccagtgctacccctgaatttgaaggtagaggaggtgatgac
cttggcaccgagatcgctaacaccctctatcggatatttaacaataaaagcagtgtcgac
ctaaagaccctctgcattagtcctcgggagcactgctgggttctctatgtggatgtgctg
ctgctggaatgtggtggaaatttgtttgatgccatttccattgctgtaaaggctgctctc
ttcaatacaaggataccaagggttcgagttctggaggatgaagaggggtcgaaggacatt
gaattgtctgatgacccttatgactgcatacgactaagtgtggagaatatcccctgcatt
gtcactctgtgcaagattggctatcggcatgtggtggatgctactcttcaggaggaggcc
tgctcgctggccagcttgctggtgtcggtgaccagcaagggagttgtgacgtgcatgagg
aaagtggggaagggcagcctggacccagagagcatcttcgagatgatggagactggcaag
cgtgtgggcaaggtgctgcatgcctccttgcagagtgttctgcacaaggaagaaagcctg
gggcccaagagacagaaagttggattcctgggatga
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