Pongo pygmaeus (Bornean orangutan): 129033913
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Entry
129033913 CDS
T10128
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X3
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129033913 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppyg03032
]
129033913 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
ppyg03400
]
129033913 (TOPBP1)
DNA replication proteins [BR:
ppyg03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
129033913 (TOPBP1)
DNA repair and recombination proteins [BR:
ppyg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
129033913 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
129033913
NCBI-ProteinID:
XP_054339084
LinkDB
All DBs
Position
2:complement(142279267..142340904)
Genome browser
AA seq
1527 aa
AA seq
DB search
MSRNDKEPFFVKFLKSSDNSKCFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYIC
DPFSGIVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTISCTSLEKEK
REEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
EKKITRYTDINMEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTEPRPEAKTMPNSSTPT
GQINTIDSRTLSDVSNISNINASCVSESICNSLNSKLEPTLENLENLDVSAFQAPEDLLD
GCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPH
VVGAKWLLECFSKGYMLSEEPYIHANYQPVEIPVSHQPESKAALLKKKNSSFSKKDFAPS
EKHEQADEDLLSQYENDSSTVVEAKMSEAEKSEVRPFNDSTHAEPLNDSTHISLQEENQS
SVSHCVPDVSTITEEGLFSQKSFLVLGFSNENESNIANIIKENAGKIMSLLSRTVADYAV
VPLLGCKVEATVGEVVTNTWLVTCIDCQTLFDPKSNPLFTPVPVMTGMTPLEDCVISFSQ
CAGAEKESLTFLANLLGASVQEYFVRKSNAKKGMFASTHLILKERGGSKYEAAKKWNLPA
VTIAWLLETARTGKRADESHFLIENSSKEERSLETEITNGISLNSDTAEHPGTRLQTHRK
TVVTPLDMNRFQSKAFRAVVSQHARQVAASPAVGQPLQKEPSLHLDTPSKFLSKDKLFKP
SFDVKDALAALETPGRPSQQKRKLSTPLSEVIVKNLQLALANSSRNAVALSASPQLKEAQ
SEKEEAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRPNDTN
REYKSVKERGVHIVSEHWLLDCAQECKHLPESLYPHTYNPKMSLDISAVQDGRLCNSRLL
SAVSATKDDEPDPLILEENDVDNMATNNKESAPSNGNGKNDSKGVLTQTLEMRENFQKQL
QEIMSATSIVKPQGQRTSLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQTVPDVNT
EPSQNEQIIWDDPTAREERARLASNLQWPSCPTQYSELQVDIQNLEDSPFQKPLRDSEIA
KQAVCDPGNIRVTEAPKHPISEELETPIKDSHLIPTPQAPSIAFPLANPPVAPHPREKII
TIEETHEELKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRN
EKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAM
RWRKKIQQRQESGIVEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVPLFKEAT
HLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPEAISFIQN
NKELGTGLSQKRKAPTEKNKIKRPRVH
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgacaaagaaccgttttttgtgaagtttttaaagtcttcagacaattcc
aaatgtttttttaaagctctcgagtccataaaagaattccaatcagaagaatatcttcag
attattacagaagaagaggcattgaagataaaggagaatgatagatcactttatatctgt
gacccttttagtggcattgtctttgatcacctcaaaaagcttggctgcagaattgttggt
cctcaagtagtcatattttgtatgcaccaccagcgatgtgtcccaagagctgaacatcca
gtttataatatggttatgtctgatgtaaccatatcttgtacaagtctggaaaaagaaaaa
agggaagaagttcataaatatgtacaaatgatgggcggacgagtatacagagaccttaat
gtatcagtaactcaccttattgcaggagaagttggtagcaaaaaatatttagttgctgca
aacctgaagaaacctattttgcttccctcttggataaaaacactttgggagaagtcacaa
gagaaaaaaataactagatatactgatataaacatggaagatttcaagtgtcctattttt
cttggttgcataatctgtgtgactggcttatgtggcttagacaggaaggaagttcagcaa
ctcacagttaagcatggaggtcaatacatgggacaattgaaaatgaatgaatgtacacac
ctcattgtgcaagaaccaaaaggtcagaagtatgagtgtgccaagagatggaatgtacac
tgtgtgaccacacagtggttttttgacagtattgagaaaggtttttgtcaggatgaatcc
atatacaagacagaacctagaccagaagcaaagactatgcccaattcttcaactcctact
ggccagatcaacacaattgatagtcgtactctttcagatgtcagcaatatttccaacata
aatgcaagttgcgtaagtgaatcaatatgtaattcacttaacagcaaactggagcctaca
cttgaaaatctggaaaatctggatgtcagtgcatttcaagcacctgaagatttattagat
ggttgtcggatatatctttgcggttttagtggcagaaagctagataaactgagaagactt
attaacagtggaggtggagttcgttttaaccagcttaatgaagatgtaactcatgttatt
gtgggagattatgatgatgaattgaagcagttttggaataaatcggcccacaggcctcat
gtagtgggagcaaagtggttgctagagtgtttcagtaaaggttatatgctttctgaagaa
ccatatatccatgctaattaccagccagtggaaattccagtttcacatcagcctgaaagt
aaagcagctcttttaaaaaagaagaacagcagcttctctaagaaagactttgctcctagt
gaaaagcatgagcaagctgatgaagatctgctctctcaatatgaaaatgatagctccaca
gtagttgaggctaagatgtctgaagccgagaagtctgaagttaggccctttaatgattct
actcatgctgagcccttgaatgattctactcacatttctttgcaagaagaaaaccagtct
tctgtcagtcattgtgtccctgatgtttctacaattactgaagaaggcttatttagccaa
aagagtttccttgttttgggttttagtaatgaaaatgaatctaacatcgcaaacatcata
aaagaaaatgctgggaaaatcatgtcccttctgagcagaactgttgccgattatgctgtg
gttcctctgctggggtgtaaagtggaagccactgtgggagaagttgttacaaatacctgg
ctggttacttgcatagactgtcagactttgtttgatccaaagtcgaatcctctcttcaca
ccagtcccagtaatgacaggaatgactcctttagaggattgtgttatttcatttagccag
tgtgctggagcagaaaaagagtctttaacattcctagcaaacctccttggagcaagtgtt
caagaatactttgttcgcaaatccaatgcaaagaaaggcatgtttgccagtactcatctt
atactgaaagaacgtggtggctctaaatatgaagctgcaaagaagtggaatttacctgca
gttactatagcttggctgttggagactgctagaacgggaaagagagcagacgaaagccat
tttctgattgaaaattcatctaaagaagagcgaagtttggaaacagaaataacaaatgga
atcagtctaaattcagatactgcagagcatcctggcacacgcctgcaaactcacagaaaa
accgtcgttacacctttagatatgaaccgctttcagagtaaagctttccgtgctgtggtc
tcacaacatgccagacaggtcgcagcctccccagcagtaggacaaccacttcagaaggag
ccctcattacacctggatacaccatcaaaattcctgtccaaggacaaactcttcaagcct
tcctttgatgtgaaggatgcacttgcagccttggaaactccaggacgtcccagccaacag
aaaaggaaactgagtacaccactctcagaagttattgtcaaaaacttgcaacttgctttg
gcaaatagctctcgaaatgctgtcgctctttctgccagccctcaactgaaagaggcccag
tcagagaaggaagaagccccaaagccacttcacaaagtagtggtatgtgttagtaaaaaa
ctcagtaagaagcagagtgaactaaatgggattgcagcctctctaggagcagattacagg
tggagttttgatgaaacggtgactcatttcatctatcaagggcggccaaatgacactaat
cgggagtataaatctgtaaaagaaagaggagtacacattgtttccgagcactggctttta
gattgtgcccaagagtgtaaacatcttcctgaatctctttatccacatacttataatccc
aaaatgagcttggatatcagtgcagtgcaagatggccggctctgtaacagtcgactactc
tcagctgtgtctgcaacaaaggatgatgagccagatcctttgattttagaagaaaatgat
gtagacaatatggccaccaataataaagagtcagcaccatcaaatggaaatggaaagaat
gactctaaaggagttctgacacagaccttagagatgagagagaactttcagaagcagtta
caggagataatgtctgcaacatcaatagtgaaaccccaagggcagaggacttccctttca
agaagtggttgtaacagcgcatcttcaacccctgacagcactcgctctgctcgcagtgga
cgaagtagagtcctagaggcactgaggcagtctcgtcaaacagtacctgatgtcaacaca
gagccttcccaaaatgaacagatcatttgggatgaccctacagcaagggaggagagagca
aggcttgccagcaatttgcagtggcctagttgtcccacacaatactctgagcttcaggtt
gacattcaaaacttggaggattctccttttcaaaagcctttacgtgattcagaaattgct
aaacaggctgtctgtgatcctggaaacatacgtgtgactgaagctcccaaacacccgatc
tctgaagaactggagactcccataaaagacagccacctgatccctacgcctcaagccccc
agtattgcctttccactcgccaacccccctgtggctccacaccctagagaaaagattata
acgatagaggagactcatgaagaattaaaaaaacagtacatatttcagttatcatctctg
aatcctcaagaacgtattgactattgtcatctgattgagaaactaggtggattggtgata
gaaaagcagtgctttgatcccacctgtacacacattgttgtgggacatccacttcgaaac
gagaagtatttagcctcagtggcagctgggaagtgggtgcttcatcgctcctaccttgaa
gcatgcaggactgctggacacttcgtgcaggaagaagactatgaatggggaagtagttcc
atacttgatgttttgactggaatcaatgtacagcaacgaagactagcacttgcagcaatg
agatggagaaaaaaaatccagcaaagacaagaatctggcattgttgagggagcgtttagt
gggtggaaggttattttacatgtggatcagtctcgagaagcaggcttcaaacgccttctt
cagtcaggaggagcaaaggtgctacctggtcattctgtacctttatttaaagaggccaca
catcttttttctgacttgaataaactgaaaccagatgactcaggagttaatatagcagaa
gctgctgcccagaacgtgtactgcttgagaacagaatacattgctgattatctcatgcag
gaatcacctcctcatgtagaaaattactgtctaccagaagctatttcatttattcagaat
aataaggaacttgggactggattatcacaaaagaggaaagctcctacagaaaaaaataaa
atcaaacgacctagagtacactaa
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integrated database retrieval system
